View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14977_high_20 (Length: 268)
Name: NF14977_high_20
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 41787329 - 41787054
Alignment:
| Q |
1 |
tcatttgttgcatcacataataaaaaaggagtatttattattttggaacataaaagacaaattgaaaca-----------------cttgaaattgaaaa |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41787329 |
tcatttgttgcatcacataataaaaaaggagtatttgttattttggaacataaaagacaaattgaaacatatagaaaatacaaagacttgaaattgaaaa |
41787230 |
T |
|
| Q |
84 |
cttaaaacagtacatataggacagttaaagatgtggattggaagcagaatctaatacatgaaccaaattgctagtattttaacattattaactttgacaa |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41787229 |
cttaaaacagtacatataggacagttaaagatgtggattggaagcagaatcaaatacatgaaccaaattgctagtattttaatattattaactttgacaa |
41787130 |
T |
|
| Q |
184 |
atttaaaacgggctatatctcc--atatttgagttgactctgggtacaaaattcattccctccatctcattcctat |
257 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41787129 |
atttaaaacgggctatatctccatatatttgagttgactctgggtacaaaattcattccctccatctcattcctat |
41787054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University