View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_high_23 (Length: 222)
Name: NF14977_high_23
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 1163956 - 1164146
Alignment:
| Q |
19 |
catattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1163956 |
catattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaag |
1164055 |
T |
|
| Q |
119 |
caaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164056 |
caaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
1164146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 3299340 - 3299149
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299340 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
3299241 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
3299240 |
gcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatc |
3299149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 3392233 - 3392042
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392233 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
3392134 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
209 |
Q |
| |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
3392133 |
gcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatc |
3392042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 1849811 - 1849620
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
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| T |
1849811 |
acatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaaggtaaatggatcaa |
1849712 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
209 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1849711 |
gcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
1849620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 38987542 - 38987356
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
38987542 |
acatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaa |
38987443 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| |||| |||||||| |
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|
| T |
38987442 |
gcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcagaa |
38987356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 40418132 - 40417946
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||||||||||| |
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| T |
40418132 |
acatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaa |
40418033 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||||||| ||| |||| |||||||| |
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|
| T |
40418032 |
gcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa |
40417946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 39726255 - 39726115
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||||||||||| |
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|
| T |
39726255 |
acatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaa |
39726156 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaata |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||| |
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|
| T |
39726155 |
gcaaagtaaatgttttggcaaccctagtgcatatgacaata |
39726115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 39879657 - 39879517
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| ||| | |||||||||||||||||||||||||||||||| |
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|
| T |
39879657 |
acatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaa |
39879558 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaata |
158 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||| |
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|
| T |
39879557 |
gcaaagtaaatgttttggcaaccctagtgcatatgacaata |
39879517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 39168743 - 39168603
Alignment:
| Q |
18 |
acatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaa |
117 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || | ||||||||||||||||||| |
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|
| T |
39168743 |
acatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatggatcaa |
39168644 |
T |
|
| Q |
118 |
gcaaagtaaatgttttggcaaccctagtacaaataacaata |
158 |
Q |
| |
|
| ||||||| | |||||||||||||||| || ||||||||| |
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|
| T |
39168643 |
gtaaagtaatttttttggcaaccctagtgcatataacaata |
39168603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 158
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
| Q |
27 |
actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag |
123 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || | |||||||||||||||||||||||| || |
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|
| T |
39399735 |
actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag |
39399636 |
T |
|
| Q |
124 |
taaatgttttggcaaccctagtacaaataacaata |
158 |
Q |
| |
|
||| | |||||||||||||||| || || |||||| |
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|
| T |
39399635 |
taatttttttggcaaccctagtgcatatgacaata |
39399601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 40596469 - 40596325
Alignment:
| Q |
20 |
atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc |
119 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||| |||||| |||||| ||| || | ||||||| ||||| ||||||| || ||||||| |
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|
| T |
40596469 |
atattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaaggtgaa--aatcaagc |
40596372 |
T |
|
| Q |
120 |
aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt |
170 |
Q |
| |
|
||||||| | |||| |||||| ||||||| | |||||||| ||||||| |
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|
| T |
40596371 |
aaagtaattcttttagcaacc----tacaaatgataataggactaatattt |
40596325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
| Q |
20 |
atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc |
119 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || |||||||||||||||||||| |
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|
| T |
25912538 |
atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt |
25912637 |
T |
|
| Q |
120 |
aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||| |||| |||||||| |||| |
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|
| T |
25912638 |
aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc |
25912727 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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