View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_high_25 (Length: 212)
Name: NF14977_high_25
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 24617336 - 24617478
Alignment:
| Q |
20 |
gatctgtaaagagcttaaagatcgtttttaccaaaggtgatatatttcgatatagtgaagcaaggtgattcctctatttccacttattactgtactgtat |
119 |
Q |
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| T |
24617336 |
gatctgtaaagagcttaaagattgtttttaccaa-ggtgatatatttaggaacagtgaagcaagttgattgctctatttccactttttactgcactgtat |
24617434 |
T |
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| Q |
120 |
tgaattagagtataaaaccaagcaacattaggccagttttaagg |
163 |
Q |
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| T |
24617435 |
tgaattagagtataaaaccaagcaacattaggacagttttaagg |
24617478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 24106350 - 24106241
Alignment:
| Q |
53 |
aaggtgatatatttcgatatagtgaagcaaggtgattcctctatttccacttattactgtactgtattgaattagagtataaaaccaagcaacattaggc |
152 |
Q |
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|||||||||| |||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24106350 |
aaggtgatat-tttcgatacagtgaagcaagttgattgctccatttccatttattactgtactatattgaattagagtataaaaccaagcaacattagga |
24106252 |
T |
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| Q |
153 |
cagttttaagg |
163 |
Q |
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||||||||||| |
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| T |
24106251 |
cagttttaagg |
24106241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 24113696 - 24113587
Alignment:
| Q |
53 |
aaggtgatatatttcgatatagtgaagcaaggtgattcctctatttccacttattactgtactgtattgaattagagtataaaaccaagcaacattaggc |
152 |
Q |
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| T |
24113696 |
aaggtgatat-tttcgatacagtgaagcaagttgattgctccatttccatttattactgtactatattgaattagagtataaaaccaagcaacattagga |
24113598 |
T |
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| Q |
153 |
cagttttaagg |
163 |
Q |
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||||||||||| |
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| T |
24113597 |
cagttttaagg |
24113587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 24101984 - 24101934
Alignment:
| Q |
107 |
tactgtactgtattgaattagagtataaaaccaagcaacattaggccagtt |
157 |
Q |
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||||||||| || ||||||||||||| |||||||||||||||||| ||||| |
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| T |
24101984 |
tactgtactatagtgaattagagtatgaaaccaagcaacattaggacagtt |
24101934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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