View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_high_3 (Length: 556)

Name: NF14977_high_3
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_high_3
NF14977_high_3
[»] chr1 (6 HSPs)
chr1 (1-540)||(51458132-51458674)
chr1 (355-473)||(30204068-30204186)
chr1 (357-473)||(51483059-51483175)
chr1 (357-473)||(51499896-51500012)
chr1 (169-284)||(51482835-51482950)
chr1 (227-284)||(51499733-51499790)
[»] chr5 (5 HSPs)
chr5 (107-543)||(43162513-43162947)
chr5 (353-473)||(27398527-27398647)
chr5 (357-473)||(20866760-20866876)
chr5 (169-284)||(20867027-20867142)
chr5 (228-284)||(27398420-27398476)
[»] scaffold0020 (2 HSPs)
scaffold0020 (357-473)||(135504-135620)
scaffold0020 (169-276)||(135782-135888)
[»] chr3 (1 HSPs)
chr3 (227-284)||(36549804-36549861)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 51458132 - 51458674
Alignment:
Q  1 tgaccagtggcataaactgcaaagtatttttaggacttgaataatgaatgatgcatttcctgaccaattctttgttagcactttataactattgannnnn 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         
T  51458132 tgacaagtggcataaactgcaaagtatttttaggacttgaataatgaatgatgcatttcctgatcaattctttgttagcactttataactattgattttt 51458231  T
Q  101 nnctccaagtgaatattttattatgaggaaaattaaatgtttattannnnnnnn---gtaatttggctataaggtaaatgtgttgactcatatcgctaaa 197  Q
      |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  51458232 ttctccaagtgaatattttattatgaggaaaattaaatgtttattttttttttttttgtaatttggctataaggtaaatgtgttgactcatatcgctaaa 51458331  T
Q  198 gtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51458332 gtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatggtgatggggaggcggttg 51458431  T
Q  298 atatgtttcaccaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgt 397  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458432 atatgtttcaccaactctctgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgt 51458531  T
Q  398 acccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccat 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458532 acccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccat 51458631  T
Q  498 tatctagttatagggatgcccctcatgaccatttactttctct 540  Q
    ||||||| | || ||||||||||||||||||||||| ||||||    
T  51458632 tatctagctctatggatgcccctcatgaccatttaccttctct 51458674  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 30204186 - 30204068
Alignment:
Q  355 ccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattg 454  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| ||||    
T  30204186 ccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattg 30204087  T
Q  455 cattcctttaaagcaggta 473  Q
    |  ||||||||||||||||    
T  30204086 ctctcctttaaagcaggta 30204068  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 51483059 - 51483175
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| |||||||| |||||||||||||||||||||||||||||  ||||| |||||||| || |||||||||||| ||||||||| |||||| |||||     
T  51483059 ttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgct 51483158  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  51483159 ctcctttaaagcaggta 51483175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 51499896 - 51500012
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | |     
T  51499896 ttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcct 51499995  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  51499996 ctcctttaaagcaggta 51500012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 51482835 - 51482950
Alignment:
Q  169 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 268  Q
    |||||||||||||||||||||| ||| ||||| || | ||| ||||||  |||  || |||| ||||| |||| |  ||||||||||||||||| |||||    
T  51482835 aggtaaatgtgttgactcatattgctgaagtgaaattgaaatctgagggcattgctgccattgagaaactgacacaaaagcaccttgagcaagacaagag 51482934  T
Q  269 ggagctacatgatgat 284  Q
    ||||||||||| ||||    
T  51482935 ggagctacatggtgat 51482950  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 51499733 - 51499790
Alignment:
Q  227 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 284  Q
    |||||||||||||||    ||||||||||||||||| |||||||||||||||| ||||    
T  51499733 cattaagaaattgacagaaaagcaccttgagcaagacaagagggagctacatggtgat 51499790  T

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Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 107 - 543
Target Start/End: Original strand, 43162513 - 43162947
Alignment:
Q  107 aagtgaatattttattatgaggaaaattaaatgtttattannnnnnnngtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaacta 206  Q
    ||||||||||||||||||||||||||||||||||||  |         |||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  43162513 aagtgaatattttattatgaggaaaattaaatgttt--tcttttttttgtaatttgactataaggtaaatgtgttgacgcatatcgctaaagtggaactg 43162610  T
Q  207 aaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttc 306  Q
    |||||||||||||||| |||||||||||||||||  |  |||||||||||||||||||||||||| ||  ||| |||| | |||| |||||| || ||||    
T  43162611 aaacctgaggaaattaatgtcattaagaaattgagacagaagcaccttgagcaagataagagggacctttatggtgatcgagaggtggttgaaatatttc 43162710  T
Q  307 accaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 406  Q
    | | || ||  ||||||||||||  |||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43162711 atcgacactccgacactaatgatagtgacttggtggttggaggggaccccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 43162810  T
Q  407 gaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagtt 506  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||| |    
T  43162811 gaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcagcttagacaattttccattatctagct 43162910  T
Q  507 atagggatgcccctcatgaccatttactttctctgct 543  Q
     || ||||||||||| ||| |||||||||||||||||    
T  43162911 ctatggatgcccctcgtgatcatttactttctctgct 43162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 353 - 473
Target Start/End: Original strand, 27398527 - 27398647
Alignment:
Q  353 tcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaat 452  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||   |||| ||||||||||  |||||||||||||||||||||| |||||| ||    
T  27398527 tcccttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccat 27398626  T
Q  453 tgcattcctttaaagcaggta 473  Q
    |||  ||||||| || |||||    
T  27398627 tgctctcctttagaggaggta 27398647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 20866876 - 20866760
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||   |||||||||| ||| || ||||      
T  20866876 ttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgtt 20866777  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  20866776 ctcctttaaagcaggta 20866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 20867142 - 20867027
Alignment:
Q  169 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 268  Q
    |||||||||||||||||||| | ||||||||||||||  || ||| |   |||| ||  ||||| ||||| ||    ||||||||||||||||| |||||    
T  20867142 aggtaaatgtgttgactcatgttgctaaagtggaactggaaactgtgagcattactgcaattaaaaaattaacagaaaagcaccttgagcaagacaagag 20867043  T
Q  269 ggagctacatgatgat 284  Q
    ||||||||||| ||||    
T  20867042 ggagctacatggtgat 20867027  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 27398420 - 27398476
Alignment:
Q  228 attaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 284  Q
    |||||||||||||  |  ||||||||||||||||| |||||||||||||||| ||||    
T  27398420 attaagaaattgaaacaaaagcaccttgagcaagacaagagggagctacatggtgat 27398476  T

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Target: scaffold0020 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 135620 - 135504
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| ||| || |||||     
T  135620 ttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgct 135521  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  135520 ctcctttaaagcaggta 135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 135888 - 135782
Alignment:
Q  169 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 268  Q
    |||||||||||||||||||||| ||||| ||||||||  || |||||   |||| ||  |||||||||||||| |  ||||||||||||||||| |||||    
T  135888 aggtaaatgtgttgactcatattgctaa-gtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag 135790  T
Q  269 ggagctac 276  Q
    ||||||||    
T  135789 ggagctac 135782  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 36549804 - 36549861
Alignment:
Q  227 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 284  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| |||||||| ||||    
T  36549804 cattaagaaattgatacaaaagcaccttgagcaagataagagggtgctacatggtgat 36549861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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