View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_high_6 (Length: 445)
Name: NF14977_high_6
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 28936752 - 28936321
Alignment:
| Q |
1 |
cgtggacaaaaatcaaagctaaagccatcaacatgacagcagatagcagcgagtcgtggtgaaggataattaatggttcaatgtacttgatgcatgcctt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936752 |
cgtggacaaaaatcaaagctaaagccataaacatgagagcagatagcagtgagtcgtggtgaaggataattaatggttcaatgtacttgatgcatgcctt |
28936653 |
T |
|
| Q |
101 |
ctattatagataggatagataggagagacatgagcaaacacagaaaattgacccccaacacataactgaatgaacccaaattacatcaagattaacggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28936652 |
ctattatagataggatagataggagagacatgagcaaacacagaaaattgacccccaacacataactgaatggacccaaattacatcaagattaacggaa |
28936553 |
T |
|
| Q |
201 |
aacgtgacaaatttgcaaagtcgcatggcatttaaaatattttgacaatttagaattacaaattctgattttgattatgcgagatcacacacaaaagacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936552 |
aacgtgacaaatttgcaaagtcgcatggcatttaaaatattttgacaatttagaattacaaattctgattttgattatgcgagatcacacacaaaagacg |
28936453 |
T |
|
| Q |
301 |
acactttcacactgtaaaattgccaatagtgaaaaacacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28936452 |
acactttcacactgtaaaattgccaatagtgaaaaacacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgc |
28936353 |
T |
|
| Q |
401 |
tgtgttttaaactgagaatttattgaacaaaa |
432 |
Q |
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| T |
28936352 |
tgtgttttaaactgaaaatttattgaacaaaa |
28936321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 10189742 - 10189642
Alignment:
| Q |
332 |
aaaaacacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgttttaaactgagaatttattgaacaaa |
431 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||| |||||| |
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| T |
10189742 |
aaaaatacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatggatttgctgtgtttgaaactgaaaattcatttaacaaa |
10189643 |
T |
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| Q |
432 |
a |
432 |
Q |
| |
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| |
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| T |
10189642 |
a |
10189642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 10189937 - 10189888
Alignment:
| Q |
162 |
ataactgaatgaacccaaattacatcaagattaacggaaaacgtgacaaa |
211 |
Q |
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||||||||||| |||||||||| ||||||| |||||||||| ||||||| |
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| T |
10189937 |
ataactgaatggacccaaattatatcaagaataacggaaaaaatgacaaa |
10189888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 35118021 - 35118109
Alignment:
| Q |
332 |
aaaaacacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgttttaaactgagaatt |
420 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
35118021 |
aaaaatacagcatttaccttgcctccttctgtaatttccccattcctatcacgtacacaatagatttgctgtgtttgaaactgaaaatt |
35118109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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