View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_high_8 (Length: 438)
Name: NF14977_high_8
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Original strand, 7241884 - 7242301
Alignment:
| Q |
15 |
aaaccatccctgacggtcctaactcacactctttgttaacctcatccaatagttcacagtagcttaatttccactcccaataagccttctctgttaagaa |
114 |
Q |
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| T |
7241884 |
aaaccatccctgacggtcctaactcacactctttgttaacctcatccaatagttcacagtagcttaatttccactcccaataagccttctctgttaagaa |
7241983 |
T |
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| Q |
115 |
caacaaagcttctgcaagagccaatgcataaaagatgtcgagagcagattcgcggttcctcttatcggtatctcccttggcaatcactccataattatgc |
214 |
Q |
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| T |
7241984 |
caacaaagcttctgcaagagccaatgcataaaagatgtcgagagcagattcgcggttcctcttatcggtatctcccttggcaatcactccataattatgc |
7242083 |
T |
|
| Q |
215 |
ctgatgagctttgtcgaagacagaaccacgcaagctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatt |
314 |
Q |
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| T |
7242084 |
ctgatgagctttgtcgaagacagaaccacgcaagctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatt |
7242183 |
T |
|
| Q |
315 |
tagcatatggtaaaagtggaacgtctgaactaatccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaatgacattagcctc |
414 |
Q |
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| T |
7242184 |
tagcatatggtaaaagtggaacgtctgaactaatccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaatgacattagcctc |
7242283 |
T |
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| Q |
415 |
cacggtgtcttttctgtg |
432 |
Q |
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| T |
7242284 |
cacggtgtcttttctgtg |
7242301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 371
Target Start/End: Complemental strand, 48731146 - 48730825
Alignment:
| Q |
50 |
ttaacctcatccaatagttcacagtagcttaatttccactcccaataagccttctctgttaagaacaacaaagcttctgcaagagccaatgcataaaaga |
149 |
Q |
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|||||||| || ||||||| ||| || |||| || ||| ||||||||||| || ||| | | ||| |||||||||||||||||||||| | ||||||| |
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| T |
48731146 |
ttaacctcttctaatagtttacaataacttacttgccattcccaataagctttttctatcagaaacgacaaagcttctgcaagagccaaggaataaaagg |
48731047 |
T |
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| Q |
150 |
tgtcgagagcagattcgcggttcctcttatcggtatctcccttggcaatcactccataattatgcctgatgagctttgtcgaagacagaaccacgcaagc |
249 |
Q |
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| T |
48731046 |
tatatagagcagatcgacagttcctcttaccggtgtctctgttcgttacctctccaaaatcatgccttactagcttcattgatgagagaaccacactagc |
48730947 |
T |
|
| Q |
250 |
tgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaacgtctgaactaatc |
349 |
Q |
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| T |
48730946 |
tgttgcagaaataagttgaagccaatagagaattctacttacatgccttaaaagaaaaaaccatttagcataaggtaataatggaacttctgagctaacc |
48730847 |
T |
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| Q |
350 |
cacgtcctagtcgttgtccttg |
371 |
Q |
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||| ||||||| | |||||||| |
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| T |
48730846 |
cacatcctagttggtgtccttg |
48730825 |
T |
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