View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_high_9 (Length: 429)
Name: NF14977_high_9
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 31648716 - 31648529
Alignment:
| Q |
28 |
aacgtgaataggtggggtgttcagggttcgacctcgaccccaacatataacaatagatatccctgtcaagtcaactgagttatacttgtttggactatta |
127 |
Q |
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| T |
31648716 |
aacgtgaataggtggggtgtcaaatgttcgacctcgacctcagtatataacaatataagtccctgtcaagtcaactgacttatacttatgtggactatta |
31648617 |
T |
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| Q |
128 |
agtgcaatgctagttataacaaaatattaattttcacgcgggtttgaatcaaaatcaaattactcatgggaaatatttatctctccta |
215 |
Q |
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| T |
31648616 |
agtgtaatgttagttataacaaaatattaattttcacgcgggtttgaatcaaaatccaattactcatgggcaatatttatctctccta |
31648529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 283 - 413
Target Start/End: Complemental strand, 31648465 - 31648335
Alignment:
| Q |
283 |
atcactaaatctttcattgttcccaacatcaaacatgttcctaaaactaaaccctacattctagaaaccatggccctcatacacaacgtttaattctcca |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
31648465 |
atcactaaatctttcattgttcccaacatcaaacatgttcctaaaactaaaccctacattctagaaaccatggccctcatacacaacctttaactctcca |
31648366 |
T |
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| Q |
383 |
catcatacccttgcctacccccactacaata |
413 |
Q |
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| T |
31648365 |
catcatacccctgcctacccccactacaata |
31648335 |
T |
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