View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_low_1 (Length: 789)
Name: NF14977_low_1
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 282 - 776
Target Start/End: Original strand, 41349736 - 41350230
Alignment:
| Q |
282 |
tgtagggacagtgttttcacaatcaataattgttatctctaaaagaagaagaaggaaaaggagaaagtgtagtactgtttgttcccatatttgatgaatt |
381 |
Q |
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| T |
41349736 |
tgtagggacagtgttttcacaatcaataattgttatctctaaaagaagaagaaggaaaaggagaaagtgtagtactgtttgttcccatatttgatgaatt |
41349835 |
T |
|
| Q |
382 |
tggtggcagttgttcttccccaccaagtccatgcccttgagcaatattgtcccagaaaagaaagttattaggacactgttgatgtgtttcttctacccag |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41349836 |
tggtggcagttgttcttccccaccaagtccatgcccttgaacaatattgtcccagaaaagaaagttattaggacactgttgatgtgtttcttctacccag |
41349935 |
T |
|
| Q |
482 |
tgaccctgcaagcattctagtactcctctatgatctccttccgcatccatgttttccacattctctatcaaaggtggtagataattcattgtgtccattg |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41349936 |
tgaccctgcaagcattctagtactcctctatgatctccttcctcatccatgttttccacattctctatcaaaggtggtagataattcattgtgtccattg |
41350035 |
T |
|
| Q |
582 |
aaaaagttgttgatattggaggaggtagtgatgactggacttgattccatgtttcagagctcaaaccatttatagaatcctggaagtattgatcggtttg |
681 |
Q |
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| T |
41350036 |
aaaaagttgttgatattggaggaggtagtgatgactggacttgattccatgtttcagagctcaaaccatttatagaatcttggaagtattgatcggtttg |
41350135 |
T |
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| Q |
682 |
cagattacaactgctttctgttgttgttccatgaagtgaatcactagactcaaacatgaaaatagggcatgtgggagaaaacaaggttgtttctg |
776 |
Q |
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| T |
41350136 |
cagattacaactgctttctgttgttgttccatgaagtgaatcactaggctcaaacataaaaatagggcatgtgggagaaaacaaggttgtttctg |
41350230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 41349483 - 41349683
Alignment:
| Q |
29 |
ccctctatagggtcagaaacacaaccaataatcttcacgcatgcatggctatacatgacatgtatcttacttcactcacttttttacaatctttacattc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41349483 |
ccctctatagggtcagaaacacaaccaataatcttcacgcatgcatggctatacatgacatgtatcttaattcactcacttttttacaatctttacattc |
41349582 |
T |
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| Q |
129 |
aaaccaacaatcaaaagggacagagaaaattgaaaaagatcatcctcaaaaggaaaagaagaatccctgcaagtttcagaaagcctggcatagaccatga |
228 |
Q |
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| T |
41349583 |
aaaacaacaatcaaaagggacagagaaaattgaaaaagatcatcctcaaaaggaaaagaagaatccctgcaagtttcagaaagcctggcatagaccatga |
41349682 |
T |
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| Q |
229 |
t |
229 |
Q |
| |
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| |
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|
| T |
41349683 |
t |
41349683 |
T |
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