View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_low_14 (Length: 336)
Name: NF14977_low_14
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 53539265 - 53539451
Alignment:
| Q |
144 |
cattaaaagatccaccatgactgtttagtttattatggttgtgtagacattgattattgcagtgctcaaggatagtctatttaaccaatgtcataattta |
243 |
Q |
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| T |
53539265 |
cattaaaagatccaccatgactgtttagtttattatggttgtgtagacattgattattgcagtgctcaagaatagtctatttaaccaatgtcataactta |
53539364 |
T |
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| Q |
244 |
gcatttaacattttgctgctaccaatatttagttctctatcctacctgaccacaatattctaaaacatttttctacatctgtgctgc |
330 |
Q |
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| T |
53539365 |
gcatttaacattttcctgctaccaatattcagttctctatcctacctgaccacaatattctaaaacatagttctacatctttgctgc |
53539451 |
T |
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Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 10603945 - 10603861
Alignment:
| Q |
31 |
taaatcatagcaataagaaaatatagttaatggtgcatcacgacatgtaacttggtcacttgagtttatcaggttttgaatgttt |
115 |
Q |
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| T |
10603945 |
taaatcatggcaataagaaaatatagttaatggtgcatcacgacatgtaacttggtcacttgagtttatcaggttttgaatgttt |
10603861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 10612064 - 10611980
Alignment:
| Q |
31 |
taaatcatagcaataagaaaatatagttaatggtgcatcacgacatgtaacttggtcacttgagtttatcaggttttgaatgttt |
115 |
Q |
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| T |
10612064 |
taaaccatggcaataaacaaatatagataatggtgcatcattacatgaaacttggttacttaagtttatcaggttctgaatgttt |
10611980 |
T |
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