View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_low_15 (Length: 327)
Name: NF14977_low_15
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 31319661 - 31319354
Alignment:
| Q |
13 |
aatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgtgagattca |
112 |
Q |
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| T |
31319661 |
aatatgggaatagattcctcatcatttggcttagcctcccctatgacatgcttagaaccactttcaagcaattcaaatgagttgtgaagtgtgagattca |
31319562 |
T |
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| Q |
113 |
tgtctccaatgttctggctctgatcattagcatgaagttcagtgttgaggactgcaatttcattgctttcaggagctgatatttcaccttcctcaaaatc |
212 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31319561 |
tgtctccaatattctggctctgatcattagcatgaagttcagtgttgaggactgcaatttcattgctttcaggagctgatacttcaccttcctcaaaatc |
31319462 |
T |
|
| Q |
213 |
atcaggtgaaacaaaaggggccctcctgaatgtcatcatgagaagagaccttagcagacttattaccaattgctgcaatgtgagggtgtacttgtgcatt |
312 |
Q |
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| T |
31319461 |
atcagttgaaacaaaagggg-cctcctgaatgtcatcatgagaagataccttagcagacttattaccaattgctgcaatgtgagggtgtacttgtgcatt |
31319363 |
T |
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| Q |
313 |
aacagttat |
321 |
Q |
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||||||||| |
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| T |
31319362 |
aacagttat |
31319354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 36769677 - 36769592
Alignment:
| Q |
16 |
atgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaag |
101 |
Q |
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| T |
36769677 |
atgggattggattcctcatctcttggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaag |
36769592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 26378614 - 26378718
Alignment:
| Q |
27 |
ttcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgtgagattca---tgtctccaatg |
123 |
Q |
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|||||||||| | |||||||||||||| ||||||| |||| || |||||||||| ||||||||||||||||| |||| ||||| |||||||| || |
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| T |
26378614 |
ttcctcatcacatggcttagcctcccctgtgacatgttcagcgtcattttcaagcaactcaaatgagttgtgaagagtgatattcaagttgtctccattg |
26378713 |
T |
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| Q |
124 |
ttctg |
128 |
Q |
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||||| |
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| T |
26378714 |
ttctg |
26378718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 14047070 - 14046998
Alignment:
| Q |
42 |
cttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgtgagattcatg |
114 |
Q |
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| T |
14047070 |
cttagcctcccctataacaggctcagtatcctgatcaagcaactcaaatgagttgtgaagtgtgatattcatg |
14046998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 17351289 - 17351357
Alignment:
| Q |
42 |
cttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgtgagatt |
110 |
Q |
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||||||||||||||| ||| ||||| || || ||||||| || |||||||||||||| ||||||||||| |
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| T |
17351289 |
cttagcctcccctataacaggctcaaaatcattttcaagtaactcaaatgagttgtggagtgtgagatt |
17351357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 7906577 - 7906665
Alignment:
| Q |
16 |
atgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgt |
104 |
Q |
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||||| || ||||| |||||| || |||||| | |||||| |||||||||| ||||| |||||||| |||||| || ||||||||||| |
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| T |
7906577 |
atggggatcgattcttcatcacttgtcttagcataccctataacatgctcagtaccaccttcaagcagttcaaaggaattgtgaagtgt |
7906665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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