View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_low_19 (Length: 290)
Name: NF14977_low_19
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 49 - 270
Target Start/End: Complemental strand, 28435137 - 28434920
Alignment:
| Q |
49 |
gagaaggaagttaaatctaagatgtgcttaaaaatggctcacaacagtgtcacnnnnnnnnnnccgaaacagaaaaggaataagataaagagcctataac |
148 |
Q |
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| T |
28435137 |
gagaaggaagttaaacctaagatgtgcttaaaaatggctcacaacagtgtcacaaaaaa----ccgaaatagaaaaggaagaagataaagagcctataac |
28435042 |
T |
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| Q |
149 |
gacaatacaaggtgataaatcttaaacatacgaaagattcatccgacaatcataaagatcaaaaccaaaactgtgtttatgagtcttcaaccatcacaga |
248 |
Q |
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||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
28435041 |
gacaacacaaggtgataaatcctaaacatacgaaggattcgtccgacaatcataaagatcaaaaccaaaattgtgtttatgagtcttcaaccatcacaaa |
28434942 |
T |
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| Q |
249 |
gaatgtgttttcatcctcttga |
270 |
Q |
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|||| |||||||| |||||||| |
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| T |
28434941 |
gaatatgttttcaccctcttga |
28434920 |
T |
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