View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_low_20 (Length: 287)

Name: NF14977_low_20
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_low_20
NF14977_low_20
[»] chr2 (2 HSPs)
chr2 (182-269)||(39375513-39375600)
chr2 (11-76)||(34414297-34414362)
[»] chr5 (3 HSPs)
chr5 (198-269)||(4925313-4925384)
chr5 (182-261)||(35205864-35205943)
chr5 (203-261)||(35211228-35211286)
[»] chr1 (4 HSPs)
chr1 (182-269)||(7386523-7386610)
chr1 (201-269)||(19322649-19322717)
chr1 (202-261)||(19991215-19991274)
chr1 (16-99)||(29081597-29081680)
[»] chr8 (2 HSPs)
chr8 (11-182)||(41488529-41488703)
chr8 (180-259)||(40278490-40278569)
[»] chr4 (2 HSPs)
chr4 (203-261)||(48265333-48265391)
chr4 (204-259)||(23563634-23563689)
[»] chr3 (2 HSPs)
chr3 (175-261)||(53464980-53465066)
chr3 (182-261)||(52314570-52314649)
[»] chr6 (1 HSPs)
chr6 (16-97)||(20408361-20408442)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 39375513 - 39375600
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 269  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39375513 agagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaat 39375600  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 34414362 - 34414297
Alignment:
Q  11 cacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaatt 76  Q
    ||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||    
T  34414362 cacagatattagcatttaatatttttcaatttgaacttattgaatgtatttatctaagcgcaaatt 34414297  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 4925384 - 4925313
Alignment:
Q  198 ctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 269  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4925384 ctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 4925313  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 35205943 - 35205864
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggc 261  Q
    ||||||| || || |||||  ||||||||| |||||||| || |||||||| ||||||||||| |||||| |||||||||    
T  35205943 agagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggc 35205864  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 35211228 - 35211286
Alignment:
Q  203 catatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggc 261  Q
    ||||||||| |||||||| || |||||||| ||||||||||| |||||| |||||||||    
T  35211228 catatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggc 35211286  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 7386610 - 7386523
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 269  Q
    |||||||||| || |||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7386610 agagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 7386523  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 19322649 - 19322717
Alignment:
Q  201 tccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaat 269  Q
    ||||||||||| |||| ||| ||||||| | |||||||||||||||||||| |||||||||||| ||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaat 19322717  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 19991215 - 19991274
Alignment:
Q  202 ccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggc 261  Q
    |||||||||| ||||||||||  |||||||| ||||||||||| ||||||||||||||||    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggc 19991274  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 29081597 - 29081680
Alignment:
Q  16 atattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttcccg 99  Q
    |||||| ||||||||||||||||||||  ||||| |||| |||||| ||||| |||||||| | ||||| ||| | ||||||||    
T  29081597 atattagcatttaatatgtttcaatttagacttattgaacgtatttgtctaagcgcaaattctgaagaagttagcttgttcccg 29081680  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 41488703 - 41488529
Alignment:
Q  11 cacagatattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttc-ccgttgcttccct 109  Q
    ||||||||||| |||||||||||||| |||||  | ||| |||||||||||||||||||| |||||||||||||| |||||||||| | |||||||||||    
T  41488703 cacagatattaacatttaatatgttttaatttagatttattgaatgtatttatctaaacgtaaattttaaagaaagtaacctgttctcggttgcttccct 41488604  T
Q  110 c--nnnnnnnnnnnnnncctatttccagttgctctcaaagaaatagttcaatcattcaagagaaatagctattta 182  Q
    |                ||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  41488603 caaaaaaaaaaaaaaaacctgtttccagttgctctcaaataaatagttcaatcatttaagagaaatagatattta 41488529  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 40278490 - 40278569
Alignment:
Q  180 ttagagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattg 259  Q
    |||||||||||| || |||||  ||||||||| ||||||||||  |||||||| ||||||||||| ||||||||||||||    
T  40278490 ttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattg 40278569  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 48265391 - 48265333
Alignment:
Q  203 catatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggc 261  Q
    ||||||||| ||||||||||  |||||||| ||||||||||| ||||||||||||||||    
T  48265391 catatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggc 48265333  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 23563689 - 23563634
Alignment:
Q  204 atatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattg 259  Q
    |||||||| ||||||||||  |||||||| ||||||||||| ||||||||||||||    
T  23563689 atatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattg 23563634  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 53465066 - 53464980
Alignment:
Q  175 gctatttagagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggc 261  Q
    |||| ||||||||| || || |||||  ||||||||| |||||||| |  |||||||| ||||||||||| |||||| |||||||||    
T  53465066 gctacttagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggc 53464980  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 52314649 - 52314570
Alignment:
Q  182 agagcatacatattgcctgtccatatgggtagtatcacactaaccaatgctcttgtgtcataatatcatggataattggc 261  Q
    ||||||| || || |||||  ||||||||| |||||||| |  |||||||| ||||||||||| |||||| |||||||||    
T  52314649 agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggc 52314570  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 20408361 - 20408442
Alignment:
Q  16 atattaccatttaatatgtttcaatttgtacttaatgaatgtatttatctaaacgcaaattttaaagaaattaacctgttcc 97  Q
    |||||| |||| || ||||| ||||||| ||||  | |||||||||||||||  ||||||||| | ||||||| ||||||||    
T  20408361 atattagcattcaacatgttccaatttggacttgttcaatgtatttatctaagtgcaaattttgatgaaattagcctgttcc 20408442  T

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