View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14977_low_22 (Length: 271)
Name: NF14977_low_22
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_22 |
 | |
|
| [»] chr3 (11 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 24617713 - 24617443
Alignment:
| Q |
1 |
taaaccttgtgaattttacattgaatcatgctgtgatgaaatacatgtgttggcacataaatagagacacattagttttgaaatcagatgttactaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24617713 |
taaaccttgtgaattttacattgaatcatgctgtgatgaaatacatgtgttggcacataaatagggacacattagttttgaaatcagatgttactaaagg |
24617614 |
T |
|
| Q |
101 |
ggaaggctcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaat |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24617613 |
ggaaggatcggaatctcgtgatggagatttggttgaattcaatcatgtatgcaggcatgcagatggatacattgttttcaggtaatgtcatactgtgaat |
24617514 |
T |
|
| Q |
201 |
tttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgcttggttttatact |
271 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24617513 |
tttccccttaattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgcttggttttatact |
24617443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 24106006 - 24106276
Alignment:
| Q |
1 |
taaaccttgtgaattttacattgaatcatgctgtgatgaaatacatgtgttggcacataaatagagacacattagttttgaaatcagatgttactaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24106006 |
taaaccttgtgaattttacattgaatcaagctgtgaagaaatacatgtgttagcgcataaatagagacacattagttttgaaatcagatgttactaaagg |
24106105 |
T |
|
| Q |
101 |
ggaaggctcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaat |
200 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24106106 |
ggaaggaccagaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatactttgttttcaggtaatttcatactgtgaat |
24106205 |
T |
|
| Q |
201 |
tttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgcttggttttatact |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24106206 |
tttcccctttattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgcttggttttatact |
24106276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 71 - 271
Target Start/End: Original strand, 24113423 - 24113622
Alignment:
| Q |
71 |
attagttttgaaatcagatgttactaaaggggaaggctcggaatctcgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac |
170 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24113423 |
attagtttt-aaatcagatgttactaaagtggaaggaccggaatcacgtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatac |
24113521 |
T |
|
| Q |
171 |
attgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactatcctaatgttgcttggttttatac |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24113522 |
tttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactgtcctaatgttgcttggttttatac |
24113621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 24101665 - 24101834
Alignment:
| Q |
39 |
aaatacatgtgttggcacataaatagagac--acattagttttgaaatcagatgttactaaaggggaaggctcggaatctcgtgatggagatttggttga |
136 |
Q |
| |
|
||||||||||||| ||||||||||||| || | ||||||||| |||| || ||||||| |||||||||| | ||| | | | || ||||||||||| |
|
|
| T |
24101665 |
aaatacatgtgttagcacataaatagatacttatattagttttcaaattagttgttactgaaggggaaggaccagaagcacacgggggcgatttggttga |
24101764 |
T |
|
| Q |
137 |
attcaattatgtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttccc |
206 |
Q |
| |
|
|||||||| ||||||||| | |||| |||||||| |||||||||||| ||||||| | ||||||||||| |
|
|
| T |
24101765 |
attcaattgtgtatgcagacgtgcaaatggatactttgttttcaggtgatttcatgatatgaattttccc |
24101834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 24616925 - 24616871
Alignment:
| Q |
96 |
aaaggggaaggctcggaatctcgtgatggagatttggttgaattcaattatgtat |
150 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24616925 |
aaaggggaaggaccggaatctcgtgatggagatttggttgaattcaattatgtat |
24616871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 23359832 - 23359762
Alignment:
| Q |
118 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
188 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23359832 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23359762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 23364653 - 23364583
Alignment:
| Q |
118 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
188 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23364653 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23364583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 23695131 - 23695061
Alignment:
| Q |
118 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
188 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23695131 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23695061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 23713571 - 23713501
Alignment:
| Q |
118 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
188 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23713571 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23713501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 23732027 - 23731957
Alignment:
| Q |
118 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
188 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23732027 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23731957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 23750482 - 23750412
Alignment:
| Q |
118 |
gtgatggagatttggttgaattcaattatgtatgcaggcatgcagatggatacattgttttcaggtaattt |
188 |
Q |
| |
|
||||| ||||||||||||| |||||||||| | || || |||| ||||| |||||||||| ||||||||| |
|
|
| T |
23750482 |
gtgattgagatttggttgatttcaattatgcacgcctgcgtgcaaatggagacattgttttgaggtaattt |
23750412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University