View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_low_3 (Length: 658)

Name: NF14977_low_3
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_low_3
NF14977_low_3
[»] chr6 (5 HSPs)
chr6 (12-312)||(13146571-13146872)
chr6 (478-642)||(13146964-13147128)
chr6 (492-568)||(13101309-13101385)
chr6 (382-426)||(13146868-13146912)
chr6 (200-244)||(20550026-20550070)
[»] chr7 (3 HSPs)
chr7 (18-131)||(24511159-24511272)
chr7 (18-83)||(24510068-24510133)
chr7 (78-131)||(24509334-24509387)
[»] scaffold0499 (3 HSPs)
scaffold0499 (279-354)||(3266-3341)
scaffold0499 (379-430)||(3609-3660)
scaffold0499 (492-525)||(3777-3810)
[»] chr8 (1 HSPs)
chr8 (63-128)||(19400750-19400814)
[»] chr5 (1 HSPs)
chr5 (81-131)||(15162677-15162727)
[»] chr4 (1 HSPs)
chr4 (33-98)||(46632293-46632358)
[»] chr1 (1 HSPs)
chr1 (159-192)||(23545205-23545238)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 13146571 - 13146872
Alignment:
Q  12 aagcaaaggtcataaccattggctatcaaaggtccaaacactatatcaccattaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaa 111  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13146571 aagcataggtcataaccattagctatcaaaggtccaaacactatatcacctttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaa 13146670  T
Q  112 aattaccatgactcaaaccaagcattcgatcaata--agaggcacacgaaattagggttgagaagagagagacaatgagggcaccaatgctatcatcaag 209  Q
    ||||||||||||||||||||||||||| |||||||  |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13146671 aattaccatgactcaaaccaagcattccatcaataagagagactcacgaaattagggttgagaagagagagacaatgagggcaccaatgctatcatcaag 13146770  T
Q  210 cagtgttgttaaatagcggctaaaacatagcggaaaatagatatttaaacatacaccnnnnnnnnnnttgatgtttaaatacacaaaagacacaaacaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||          ||||||||||||||||||||||||||||||| |    
T  13146771 cagtgttgttaaatagcggctaaaacatagcggaaaatagatgattaaacaaacacc-aaaaaaaatttgatgtttaaatacacaaaagacacaaacatt 13146869  T
Q  310 aga 312  Q
    |||    
T  13146870 aga 13146872  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 478 - 642
Target Start/End: Original strand, 13146964 - 13147128
Alignment:
Q  478 aataaccagtggtatgaattacagcattcttgaatctcaactgatgaacttcgaatttgaagtttttcgatcaaacagtttaattagtttacttatgagc 577  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  13146964 aataactactggtatgaattacagtattcttgaatctcaactgatgaactttgaatttgaagtttttcgatcaaacagtttaatttttttacttatgagc 13147063  T
Q  578 aagaatatatttcaaattcgtgtattctctcaaaatttgaatgagttacatgaagagaatataac 642  Q
    |||||||||||||||  ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13147064 aagaatatatttcaatgtcgtgcattttctcaaaatttgaatgagttacatgaagagaatataac 13147128  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 492 - 568
Target Start/End: Complemental strand, 13101385 - 13101309
Alignment:
Q  492 tgaattacagcattcttgaatctcaactgatgaacttcgaatttgaagtttttcgatcaaacagtttaattagttta 568  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| | || ||||||||||    
T  13101385 tgaattacagaattcttgaatctcaactgatgaactttgactttgaagtttttcgatcaaataattcaattagttta 13101309  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 13146868 - 13146912
Alignment:
Q  382 ttagagaaagtagagatataaagaattttttcaagtgcaattgca 426  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  13146868 ttagagaaagtagagatatgaagaattttttcaagtgcaattgca 13146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 20550026 - 20550070
Alignment:
Q  200 tatcatcaagcagtgttgttaaatagcggctaaaacatagcggaa 244  Q
    |||||||||||||||||||||||||||| |||||||||| |||||    
T  20550026 tatcatcaagcagtgttgttaaatagcgtctaaaacatatcggaa 20550070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 24511159 - 24511272
Alignment:
Q  18 aggtcataaccattggctatcaaaggtccaaacactatatcaccattaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaattac 117  Q
    |||||||||| ||| |||||||||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24511159 aggtcataactattagctatcaaaggtgcaaacaatatatcacatttaaattcaatatgtaagtatatcataaagtagaacgtaaccaaagtaaaattac 24511258  T
Q  118 catgactcaaacca 131  Q
    ||||||||||||||    
T  24511259 catgactcaaacca 24511272  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 24510133 - 24510068
Alignment:
Q  18 aggtcataaccattggctatcaaaggtccaaacactatatcaccattaaattcaatatgtaagtat 83  Q
    |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  24510133 aggtcataaccattagctatcaaaggtccaaacactatatcacatttaaattcaatatgtaagtat 24510068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 24509387 - 24509334
Alignment:
Q  78 aagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaacca 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24509387 aagtatatcataaagtggaacgaaaccaaagtaaaattaccatgactcaaacca 24509334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 3266 - 3341
Alignment:
Q  279 gatgtttaaatacacaaaagacacaaacaatagatgattaggtttcgccaactttgcacatgtctatcacaataga 354  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||| ||||||||||||||||||||||    
T  3266 gatgtttaaatacacaaaagacacaaacaatagatgattcggtttgaccaactatgcacatgtctatcacaataga 3341  T

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Target: scaffold0499; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 3609 - 3660
Alignment:
Q  379 tccttagagaaagtagagatataaagaattttttcaagtgcaattgcaggtg 430  Q
    ||||||||||||||| |||||| ||||||||| |||| ||||||||||||||    
T  3609 tccttagagaaagtatagatatgaagaattttgtcaactgcaattgcaggtg 3660  T

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Target: scaffold0499; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 492 - 525
Target Start/End: Original strand, 3777 - 3810
Alignment:
Q  492 tgaattacagcattcttgaatctcaactgatgaa 525  Q
    |||||||||| |||||||||||||||||||||||    
T  3777 tgaattacagaattcttgaatctcaactgatgaa 3810  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 19400814 - 19400750
Alignment:
Q  63 ttaaattcaatatgtaagtatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaa 128  Q
    ||||||||||||| || |||||| ||||||||||||||||||||| ||||| |||||||| |||||    
T  19400814 ttaaattcaatatttatgtatataataaagtagaacgaaaccaaattaaaa-taccatgattcaaa 19400750  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 15162677 - 15162727
Alignment:
Q  81 tatatcataaagtagaacgaaaccaaagtaaaattaccatgactcaaacca 131  Q
    |||||||||| |||||| |||||||||||||||||||||||| | ||||||    
T  15162677 tatatcataatgtagaatgaaaccaaagtaaaattaccatgattaaaacca 15162727  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 46632293 - 46632358
Alignment:
Q  33 gctatcaaaggtccaaa-cactatatcaccattaaattcaatatgtaagtatatcataaagtagaac 98  Q
    |||| |||||||||||| ||||||||||| ||  |||||||||||||  ||||||||||||||||||    
T  46632293 gctaccaaaggtccaaaacactatatcac-atataattcaatatgtatctatatcataaagtagaac 46632358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 23545205 - 23545238
Alignment:
Q  159 aattagggttgagaagagagagacaatgagggca 192  Q
    |||||||||||||||||||||||||| |||||||    
T  23545205 aattagggttgagaagagagagacaacgagggca 23545238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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