View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_low_4 (Length: 556)

Name: NF14977_low_4
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_low_4
NF14977_low_4
[»] chr1 (6 HSPs)
chr1 (1-540)||(51458132-51458674)
chr1 (355-473)||(30204068-30204186)
chr1 (357-473)||(51483059-51483175)
chr1 (357-473)||(51499896-51500012)
chr1 (169-284)||(51482835-51482950)
chr1 (227-284)||(51499733-51499790)
[»] chr5 (5 HSPs)
chr5 (107-543)||(43162513-43162947)
chr5 (353-473)||(27398527-27398647)
chr5 (357-473)||(20866760-20866876)
chr5 (169-284)||(20867027-20867142)
chr5 (228-284)||(27398420-27398476)
[»] scaffold0020 (2 HSPs)
scaffold0020 (357-473)||(135504-135620)
scaffold0020 (169-276)||(135782-135888)
[»] chr3 (1 HSPs)
chr3 (227-284)||(36549804-36549861)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Original strand, 51458132 - 51458674
Alignment:
Q  1 tgaccagtggcataaactgcaaagtatttttaggacttgaataatgaatgatgcatttcctgaccaattctttgttagcactttataactattgannnnn 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         
T  51458132 tgacaagtggcataaactgcaaagtatttttaggacttgaataatgaatgatgcatttcctgatcaattctttgttagcactttataactattgattttt 51458231  T
Q  101 nnctccaagtgaatattttattatgaggaaaattaaatgtttattannnnnnnn---gtaatttggctataaggtaaatgtgttgactcatatcgctaaa 197  Q
      |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||    
T  51458232 ttctccaagtgaatattttattatgaggaaaattaaatgtttattttttttttttttgtaatttggctataaggtaaatgtgttgactcatatcgctaaa 51458331  T
Q  198 gtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51458332 gtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatggtgatggggaggcggttg 51458431  T
Q  298 atatgtttcaccaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgt 397  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458432 atatgtttcaccaactctctgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgt 51458531  T
Q  398 acccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccat 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458532 acccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccat 51458631  T
Q  498 tatctagttatagggatgcccctcatgaccatttactttctct 540  Q
    ||||||| | || ||||||||||||||||||||||| ||||||    
T  51458632 tatctagctctatggatgcccctcatgaccatttaccttctct 51458674  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 30204186 - 30204068
Alignment:
Q  355 ccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattg 454  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| ||||    
T  30204186 ccttagatggtgctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattg 30204087  T
Q  455 cattcctttaaagcaggta 473  Q
    |  ||||||||||||||||    
T  30204086 ctctcctttaaagcaggta 30204068  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 51483059 - 51483175
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| |||||||| |||||||||||||||||||||||||||||  ||||| |||||||| || |||||||||||| ||||||||| |||||| |||||     
T  51483059 ttagatggtgctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgct 51483158  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  51483159 ctcctttaaagcaggta 51483175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 51499896 - 51500012
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| ||||||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | |     
T  51499896 ttagacggtgctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcct 51499995  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  51499996 ctcctttaaagcaggta 51500012  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 51482835 - 51482950
Alignment:
Q  169 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 268  Q
    |||||||||||||||||||||| ||| ||||| || | ||| ||||||  |||  || |||| ||||| |||| |  ||||||||||||||||| |||||    
T  51482835 aggtaaatgtgttgactcatattgctgaagtgaaattgaaatctgagggcattgctgccattgagaaactgacacaaaagcaccttgagcaagacaagag 51482934  T
Q  269 ggagctacatgatgat 284  Q
    ||||||||||| ||||    
T  51482935 ggagctacatggtgat 51482950  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 51499733 - 51499790
Alignment:
Q  227 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 284  Q
    |||||||||||||||    ||||||||||||||||| |||||||||||||||| ||||    
T  51499733 cattaagaaattgacagaaaagcaccttgagcaagacaagagggagctacatggtgat 51499790  T

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Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 107 - 543
Target Start/End: Original strand, 43162513 - 43162947
Alignment:
Q  107 aagtgaatattttattatgaggaaaattaaatgtttattannnnnnnngtaatttggctataaggtaaatgtgttgactcatatcgctaaagtggaacta 206  Q
    ||||||||||||||||||||||||||||||||||||  |         |||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  43162513 aagtgaatattttattatgaggaaaattaaatgttt--tcttttttttgtaatttgactataaggtaaatgtgttgacgcatatcgctaaagtggaactg 43162610  T
Q  207 aaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgatggggaggcggttgatatgtttc 306  Q
    |||||||||||||||| |||||||||||||||||  |  |||||||||||||||||||||||||| ||  ||| |||| | |||| |||||| || ||||    
T  43162611 aaacctgaggaaattaatgtcattaagaaattgagacagaagcaccttgagcaagataagagggacctttatggtgatcgagaggtggttgaaatatttc 43162710  T
Q  307 accaactctttgacactaatgatgatgacctgatggttggagaggatcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 406  Q
    | | || ||  ||||||||||||  |||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43162711 atcgacactccgacactaatgatagtgacttggtggttggaggggaccccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaatt 43162810  T
Q  407 gaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaaagcaggtagaaccggcttagacaattttccattatctagtt 506  Q
    |||||||||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||| |    
T  43162811 gaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaaagcaggtaaaatcagcttagacaattttccattatctagct 43162910  T
Q  507 atagggatgcccctcatgaccatttactttctctgct 543  Q
     || ||||||||||| ||| |||||||||||||||||    
T  43162911 ctatggatgcccctcgtgatcatttactttctctgct 43162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 353 - 473
Target Start/End: Original strand, 27398527 - 27398647
Alignment:
Q  353 tcccttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaat 452  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||   |||| ||||||||||  |||||||||||||||||||||| |||||| ||    
T  27398527 tcccttagatggtgctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccat 27398626  T
Q  453 tgcattcctttaaagcaggta 473  Q
    |||  ||||||| || |||||    
T  27398627 tgctctcctttagaggaggta 27398647  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 20866876 - 20866760
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||   |||||||||| ||| || ||||      
T  20866876 ttagatggtgctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgtt 20866777  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  20866776 ctcctttaaagcaggta 20866760  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 20867142 - 20867027
Alignment:
Q  169 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 268  Q
    |||||||||||||||||||| | ||||||||||||||  || ||| |   |||| ||  ||||| ||||| ||    ||||||||||||||||| |||||    
T  20867142 aggtaaatgtgttgactcatgttgctaaagtggaactggaaactgtgagcattactgcaattaaaaaattaacagaaaagcaccttgagcaagacaagag 20867043  T
Q  269 ggagctacatgatgat 284  Q
    ||||||||||| ||||    
T  20867042 ggagctacatggtgat 20867027  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 27398420 - 27398476
Alignment:
Q  228 attaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 284  Q
    |||||||||||||  |  ||||||||||||||||| |||||||||||||||| ||||    
T  27398420 attaagaaattgaaacaaaagcaccttgagcaagacaagagggagctacatggtgat 27398476  T

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Target: scaffold0020 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 357 - 473
Target Start/End: Complemental strand, 135620 - 135504
Alignment:
Q  357 ttagaaggtgctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgca 456  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| ||| || |||||     
T  135620 ttagatggtgctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgct 135521  T
Q  457 ttcctttaaagcaggta 473  Q
     ||||||||||||||||    
T  135520 ctcctttaaagcaggta 135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 276
Target Start/End: Complemental strand, 135888 - 135782
Alignment:
Q  169 aggtaaatgtgttgactcatatcgctaaagtggaactaaaacctgaggaaattagtgtcattaagaaattgacgcgtaagcaccttgagcaagataagag 268  Q
    |||||||||||||||||||||| ||||| ||||||||  || |||||   |||| ||  |||||||||||||| |  ||||||||||||||||| |||||    
T  135888 aggtaaatgtgttgactcatattgctaa-gtggaactggaaactgagagtattactgcaattaagaaattgacacaaaagcaccttgagcaagacaagag 135790  T
Q  269 ggagctac 276  Q
    ||||||||    
T  135789 ggagctac 135782  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 36549804 - 36549861
Alignment:
Q  227 cattaagaaattgacgcgtaagcaccttgagcaagataagagggagctacatgatgat 284  Q
    ||||||||||||||  |  ||||||||||||||||||||||||| |||||||| ||||    
T  36549804 cattaagaaattgatacaaaagcaccttgagcaagataagagggtgctacatggtgat 36549861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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