View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_low_5 (Length: 518)
Name: NF14977_low_5
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_5 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 48911690 - 48911227
Alignment:
| Q |
1 |
atggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactg |
100 |
Q |
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| T |
48911690 |
atggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacgccatcggggaggcctactg |
48911591 |
T |
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| Q |
101 |
cttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911590 |
cttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgac |
48911491 |
T |
|
| Q |
201 |
attttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |
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| T |
48911490 |
attttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaagtagatggtaagtgctttctct |
48911391 |
T |
|
| Q |
301 |
tctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatatatgaattagaatgaacgtgatgatgagagaggtattgtacta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
48911390 |
tctccttcttccgtattcatcatctttgccttgtcttctgtgtgtttggatactatgaatgaattagaatgaacgtgatgatgagagaggtattgtagca |
48911291 |
T |
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| Q |
401 |
attaattgtttctgctattgcttttaatgtccaacaatggaga-gatcctaactctggttgccc |
463 |
Q |
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| T |
48911290 |
attaactgtttctgctattgcttttaatgtccaacaatggagaggatcctaactctggttgccc |
48911227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 263
Target Start/End: Original strand, 48975036 - 48975193
Alignment:
| Q |
106 |
gaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacatttt |
205 |
Q |
| |
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||||||||||||||||| |||| || ||||| | || |||| || |||||| || |||||| ||||| ||||| ||||| |||||||| |||| | |
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| T |
48975036 |
gaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacatggt |
48975135 |
T |
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| Q |
206 |
gacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgc |
263 |
Q |
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| T |
48975136 |
gaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccaggtgc |
48975193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 281
Target Start/End: Original strand, 48952213 - 48952342
Alignment:
| Q |
152 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
251 |
Q |
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| T |
48952213 |
tagatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcat |
48952312 |
T |
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| Q |
252 |
gtggccaggtgctaagtaaggtatgaagta |
281 |
Q |
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| T |
48952313 |
gtgccctgctgctaagtatggaatgaagta |
48952342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 49 - 321
Target Start/End: Complemental strand, 5808 - 5536
Alignment:
| Q |
49 |
tcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaag |
148 |
Q |
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||||||||||||| || | ||||| |||||| ||||| |||||||| ||| | || |||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
5808 |
tcgaggtcggtggcggcggagaggctttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaaag |
5709 |
T |
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| Q |
149 |
gaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggat |
248 |
Q |
| |
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| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| |||||| |
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| T |
5708 |
ggatggatttgccaaggatttgagcattggagggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaagggat |
5609 |
T |
|
| Q |
249 |
catgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctcttctccttcttccgtattcatc |
321 |
Q |
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| T |
5608 |
catatgaccaggagctaagtaaggtatgaagtagatagtaagtgctttctcttctccttcttccatatccatc |
5536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 79 - 304
Target Start/End: Complemental strand, 9762 - 9553
Alignment:
| Q |
79 |
acaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattgg |
178 |
Q |
| |
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||||| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
9762 |
acaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttgg |
9663 |
T |
|
| Q |
179 |
agggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgctaagtaaggtatgaa |
278 |
Q |
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| T |
9662 |
aaggtgtggttatgatggtaacattttgacagcgta----------------tatgtcgcatagagggatcatatgaccaggtgataagtaaggtatgaa |
9579 |
T |
|
| Q |
279 |
gtatatattaagtggtttctcttctc |
304 |
Q |
| |
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||| || ||||||| ||||||||||| |
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| T |
9578 |
gtagattttaagtgctttctcttctc |
9553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 31742730 - 31742786
Alignment:
| Q |
375 |
gtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtc |
431 |
Q |
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||||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||| |
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| T |
31742730 |
gtgatgatgagagagttattgtagcaattaattatttccgctattgcttttagtgtc |
31742786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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