View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14977_low_6 (Length: 507)
Name: NF14977_low_6
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14977_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 128 - 492
Target Start/End: Original strand, 31504076 - 31504447
Alignment:
| Q |
128 |
gtgataatgatggcctcattcattact--------tcattgatgattcaatttcttatttgtgctctgcccaacagaaagcatacgtaattctttgggtg |
219 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31504076 |
gtgataatgatggcctcattcattacttcaatacttcattgatgattcaatttcttatttgtgctctgcccaacagaaagcatacgtaattctttgggtg |
31504175 |
T |
|
| Q |
220 |
aggactgaccagtactcctcggttgagagcgcttacgccgatggaacgataagattnnnnnnnttagtggccaaattacaagataacaagccgtaagtta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31504176 |
aggactgaccagtactcctcggttgagagcgcttacgtggatggaacgataagattaaaaaaattagtggccaaattacaagataacaagccgtaagtta |
31504275 |
T |
|
| Q |
320 |
tctgttgaatgttgctctatctaaccatgcagnnnnnnnnnnaatcaaaattaattttaagtgtcgtttcatagcccgaggttggctcctggtgctgtgg |
419 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31504276 |
tctgttgaatgttgctctatctaaccgtgcag-tttttttttaatcaaaattaattttaagtgccgtttcatagcccgaggttggctcctggtgctgtgg |
31504374 |
T |
|
| Q |
420 |
atttgcaaactcgccaattcggtcctcctttaaaggaatcaaacatgacagctgaagcatataaggacgcagt |
492 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31504375 |
atttacaaactcgccaattcggtccgcctttaaaggaatcaaacatgacagctgaagcatataaggacgcagt |
31504447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 128 - 492
Target Start/End: Complemental strand, 27610188 - 27609816
Alignment:
| Q |
128 |
gtgataatgatggcctcattcattacttca--------ttgatgattcaatttcttatttgtgctctgcccaacagaaagcatacgtaattctttgggtg |
219 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
27610188 |
gtgataatgatggcctcattcattacttcaatacttcattgatgattcaatttcttatttgtgttctacccaacagaaagcatacgtaattctttgggtg |
27610089 |
T |
|
| Q |
220 |
aggactgaccagtactcctcggttgagagcgcttacgccgatggaacgataagattnnnnnnnttagtggccaaattacaagataacaagccgtaagtta |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
27610088 |
aggactgatcagtactcctcggttgagagagcttacgtggatggaacaataagattaaaaaaattagtggccaaattacaagataacaagctgtaagtta |
27609989 |
T |
|
| Q |
320 |
tctgttgaatgttgctctatctaaccatgcagnnnnnnnnnnaatcaaaattaattttaagtgtcgtttcatagcccgaggttggctcctggtgctgtgg |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |||||||||| |||||||||| ||||| | |
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| T |
27609988 |
tctgttgaatgttgctctatctaaccatgcagttgttttttgaatcaaaattaatttaaagtgtcatttcctagcccgaggctggctcctggcgctgtcg |
27609889 |
T |
|
| Q |
420 |
atttgcaaactcgccaattcggtcctcctttaaaggaatcaaacatgacagctgaagcatataaggacgcagt |
492 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27609888 |
atttgcaaactcgccagtttggtccacctttaaaggaatcaaacatgacagctgaagcatataaggacgcagt |
27609816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 128 - 492
Target Start/End: Complemental strand, 34498656 - 34498286
Alignment:
| Q |
128 |
gtgataatgatggcctcattcattacttca--------ttgatgattcaatttcttatttgtgctctgcccaacagaaagcatacgtaattctttgggtg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34498656 |
gtgataatgatggcctcattcattacttcaatacttcattgatgattcaatttcttatttgtgttctgcccaacagaaagcatacgtaattctttgggtg |
34498557 |
T |
|
| Q |
220 |
aggactgaccagtactcctcggttgagagcgcttacgccgatggaacgataagattnnnnnnnttagtggccaaattacaagataacaagccgtaagtta |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
34498556 |
aggactgatcagtactcctcggttgagagcgcttacgtggatggaacagtaagattaaaaaaattagtggccaaattacaagataacaagctgtaagtta |
34498457 |
T |
|
| Q |
320 |
tctgttgaatgttgctctatctaaccatgcagnnnnnnnnnnaatcaaaattaattttaagtgtcgtttcatagcccgaggttggctcctggtgctgtgg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||| |||||||||| ||||||| |
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| T |
34498456 |
tctgttgaatgttgctctatctaaccatgcagttgttttttgaatcaaaattaattt--agtgtcatttcctagcccgaggctggctcctggcgctgtgg |
34498359 |
T |
|
| Q |
420 |
atttgcaaactcgccaattcggtcctcctttaaaggaatcaaacatgacagctgaagcatataaggacgcagt |
492 |
Q |
| |
|
|||||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34498358 |
atttgcaaactcaccattttggtcgacctttaaaggaatcaaacatgacagctgaagcatataaggacgcagt |
34498286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 27610301 - 27610232
Alignment:
| Q |
15 |
gagatgaaatttttactgagcactgatacggaatccattggatattaagtcaacatttttgtgtctcaaa |
84 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27610301 |
gagatgaaatttttactgagcaccgatacggaatccattggatattaagtcaacatttttgtgtctcaaa |
27610232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 31503963 - 31504032
Alignment:
| Q |
15 |
gagatgaaatttttactgagcactgatacggaatccattggatattaagtcaacatttttgtgtctcaaa |
84 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503963 |
gagatgaaatttttactgagcactgatatggaatccattggatattaagtcaacatttttgtgtctcaaa |
31504032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 34498769 - 34498700
Alignment:
| Q |
15 |
gagatgaaatttttactgagcactgatacggaatccattggatattaagtcaacatttttgtgtctcaaa |
84 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34498769 |
gagatgaaatttttactgagcaccgatacggaatccattggatattaagtcaacatttttgtgtctcaaa |
34498700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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