View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14977_low_7 (Length: 483)

Name: NF14977_low_7
Description: NF14977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14977_low_7
NF14977_low_7
[»] chr4 (17 HSPs)
chr4 (21-454)||(4008512-4008944)
chr4 (309-454)||(3985786-3985931)
chr4 (309-452)||(3816395-3816538)
chr4 (330-464)||(4001113-4001247)
chr4 (331-464)||(4024008-4024141)
chr4 (309-454)||(4217417-4217562)
chr4 (324-454)||(3956655-3956785)
chr4 (342-454)||(3934142-3934254)
chr4 (313-451)||(3808823-3808961)
chr4 (342-454)||(3920921-3921033)
chr4 (97-257)||(4023767-4023927)
chr4 (405-466)||(3800482-3800543)
chr4 (156-258)||(3956833-3956935)
chr4 (156-258)||(3985627-3985729)
chr4 (151-197)||(4000905-4000951)
chr4 (161-210)||(3934570-3934619)
chr4 (391-464)||(3964684-3964757)
[»] chr5 (2 HSPs)
chr5 (289-465)||(13396740-13396916)
chr5 (157-258)||(13396601-13396702)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 454
Target Start/End: Original strand, 4008512 - 4008944
Alignment:
Q  21 tagttttttgaatttcttcagttggtgataaatgaggaggcttaaattattatcacaacaagttaaatccaatttgacaagattgtcaagagataaaata 120  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| |    
T  4008512 tagttttttgaatttcttcagttggtgataaaagaggaagcttaaattattatcacagcaagttagatccaattcgacaagattgtcaagagataaaaca 4008611  T
Q  121 gatggatcgacgtttttcaagaaaggagcttctgtgatattcaatactttcagatttgtagcttttgaaaggtctggcaactccatcagggatcgtgaat 220  Q
    |||||||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  4008612 gatggatcgacgtttttcaacaatggagcttgtgtgatattcaatactttaagatttgtagcttttgaaaggtctggcaactccttcaaggatcgtgaat 4008711  T
Q  221 caaagagtctaaattcttttaaattaactagatcctgccnnnnnnnnnnggcaacatcaaacaaacgcttaagtaattaattgcaaactccttgaattta 320  Q
    |||||||||||||||||| ||||||||||||||||||||          ||  | |||||||| | ||||||||||||| || |||| |||||||||  |    
T  4008712 caaagagtctaaattcttgtaaattaactagatcctgcc-aaaaattatggtgatatcaaacataagcttaagtaattagttacaaattccttgaatcaa 4008810  T
Q  321 gacaaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaagattctccg 420  Q
    |  |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4008811 gcgaaatttaatcaggaagatacatagtcaattaccttcactccataccaaagcttttctacttggctaaatgacaagtcaaatataacaagattctccg 4008910  T
Q  421 cagaaaacttctttggcaatgattttagagggta 454  Q
    ||||||||||||||||||||||||||||||||||    
T  4008911 cagaaaacttctttggcaatgattttagagggta 4008944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 3985786 - 3985931
Alignment:
Q  309 tccttgaatttagacaaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataa 408  Q
    ||||||||||| || ||||||||||||  ||| ||||||||||||||||  |||||||||||||||||||||| | ||||| | |||||||| |||||||    
T  3985786 tccttgaattttgataaatttaatctgatagacacatattcaattacctgtactccacaccaaagcttttctactaggctatacgacaagtccaatataa 3985885  T
Q  409 caagattctccgcagaaaacttctttggcaatgattttagagggta 454  Q
    |||| ||||| ||||||||||||||||||||||| | |||||||||    
T  3985886 caagtttctctgcagaaaacttctttggcaatgactctagagggta 3985931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 309 - 452
Target Start/End: Original strand, 3816395 - 3816538
Alignment:
Q  309 tccttgaatttagacaaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataa 408  Q
    |||||||||| ||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| | | | |||  ||||||||| |||||||    
T  3816395 tccttgaattaagataaatttaatttggaagataaatatccaattacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataa 3816494  T
Q  409 caagattctccgcagaaaacttctttggcaatgattttagaggg 452  Q
    |||||||||  ||||||||||||| ||| |||||||||||||||    
T  3816495 caagattctttgcagaaaacttctctgggaatgattttagaggg 3816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 330 - 464
Target Start/End: Original strand, 4001113 - 4001247
Alignment:
Q  330 aatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaagattctccgcagaaaact 429  Q
    |||||||| || |||||||||||||||| ||||||||||||||| ||||| | | | |||  ||| ||||| ||||||||||||||||   |||||||||    
T  4001113 aatctggatgacacatattcaattacctgcactccacaccaaagattttccactcgactatgtgaaaagtccaatataacaagattctttccagaaaact 4001212  T
Q  430 tctttggcaatgattttagagggtagtgcatccaa 464  Q
    ||||||| ||||||||||||||||| || ||||||    
T  4001213 tctttgggaatgattttagagggtaatgtatccaa 4001247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 4024008 - 4024141
Alignment:
Q  331 atctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaagattctccgcagaaaactt 430  Q
    |||| ||||| | ||||||| |||||| ||||||||||||||||||||| | | | |||  ||||||||| ||||||||||||||||  |||||||||||    
T  4024008 atcttgaagagaaatattcacttacctgcactccacaccaaagcttttccactagactatctgacaagtccaatataacaagattctttgcagaaaactt 4024107  T
Q  431 ctttggcaatgattttagagggtagtgcatccaa 464  Q
    || ||| ||||||||||||||||| | |||||||    
T  4024108 ctctgggaatgattttagagggtaattcatccaa 4024141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 454
Target Start/End: Original strand, 4217417 - 4217562
Alignment:
Q  309 tccttgaatttagacaaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataa 408  Q
    |||||||||| ||| |||||| ||||| |||| ||||||||||||||||  |||||||||||||||||||| | ||  ||| |   |||||  |||||||    
T  4217417 tccttgaattaagataaatttcatctgaaagacacatattcaattacctgtactccacaccaaagcttttccactttactataacgcaagttcaatataa 4217516  T
Q  409 caagattctccgcagaaaacttctttggcaatgattttagagggta 454  Q
    |||||||||| |||||||| |||| ||| |||||||||||||||||    
T  4217517 caagattctctgcagaaaagttctctgggaatgattttagagggta 4217562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 324 - 454
Target Start/End: Complemental strand, 3956785 - 3956655
Alignment:
Q  324 aaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaagattctccgcag 423  Q
    ||||||||||| ||||| || |||||||||| || ||||||||||||||| ||||| | | |||||  ||||| ||| ||||||||||||||||| ||||    
T  3956785 aaatttaatctagaagacacgtattcaattatctgcactccacaccaaagtttttccagtaggctacctgacaggtccaatataacaagattctctgcag 3956686  T
Q  424 aaaacttctttggcaatgattttagagggta 454  Q
    ||||||||| ||  | |||||||||||||||    
T  3956685 aaaacttctctgagagtgattttagagggta 3956655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 3934254 - 3934142
Alignment:
Q  342 acatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaagattctccgcagaaaacttctttggcaatg 441  Q
    ||||||||||||||||  ||||||||||| |||||||| | | | ||||   ||||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  3934254 acatattcaattacctgtactccacaccatagcttttccattcgactaagatacaagtccaatataacaagattctctgcagaaaacttctctgggaatg 3934155  T
Q  442 attttagagggta 454  Q
    |||||||||||||    
T  3934154 attttagagggta 3934142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 313 - 451
Target Start/End: Original strand, 3808823 - 3808961
Alignment:
Q  313 tgaatttagacaaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaag 412  Q
    |||||| ||| ||||||||| ||||||| || ||| ||||||||| |||||||| |||||||||||| | ||  |||    ||||||  |||||||||||    
T  3808823 tgaattaagataaatttaatttggaagacacgtatccaattacctgcactccacgccaaagcttttccattttactatcatacaagttcaatataacaag 3808922  T
Q  413 attctccgcagaaaacttctttggcaatgattttagagg 451  Q
    |||||| |||||||| |||| ||| ||||||||||||||    
T  3808923 attctctgcagaaaagttctctgggaatgattttagagg 3808961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 3921033 - 3920921
Alignment:
Q  342 acatattcaattaccttcactccacaccaaagcttttctaattggctaaatgacaagtcaaatataacaagattctccgcagaaaacttctttggcaatg 441  Q
    ||||||||||||||||  ||||||||||| |||||||| | | | | ||   ||||||| ||||||||||||||||| ||| ||||||||| ||  ||||    
T  3921033 acatattcaattacctgtactccacaccatagcttttccattcgaccaagatacaagtccaatataacaagattctcagcaaaaaacttctctgagaatg 3920934  T
Q  442 attttagagggta 454  Q
    |||||||||||||    
T  3920933 attttagagggta 3920921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 257
Target Start/End: Original strand, 4023767 - 4023927
Alignment:
Q  97 acaagattgtcaagagataaaatagatggatcgacgtttttcaagaaaggagcttctgtgatattcaatactttcagatttgtagcttttgaaaggtctg 196  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||||   | ||   | ||  |||||||||||||| ||||| ||||||||||||| ||| |    
T  4023767 acaagcttgtcaagagagaaaatagatggatggacgcttttcaaattatgacaatgtgccatattcaatactttaagattagtagcttttgaaaagtcag 4023866  T
Q  197 gcaactccatcagggatcgtgaatcaaagagtctaaattcttttaaattaactagatcctg 257  Q
    | |||||| ||||| ||   ||||   |||||||||  |||||||||||||||||||||||    
T  4023867 gtaactccttcaggaatttcgaataggagagtctaacctcttttaaattaactagatcctg 4023927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 466
Target Start/End: Original strand, 3800482 - 3800543
Alignment:
Q  405 ataacaagattctccgcagaaaacttctttggcaatgattttagagggtagtgcatccaatg 466  Q
    |||||||||||||  ||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  3800482 ataacaagattctttgcagaaaacttctctgggaatgattttagagggtaatgcatccaatg 3800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 3956935 - 3956833
Alignment:
Q  156 gatattcaatactttcagatttgtagcttttgaaaggtctggcaactccatcagggatcgtgaatcaaagagtctaaattcttttaaattaactagatcc 255  Q
    |||||||||||| || |||||||| |||||||||| |||||| | | || ||||| ||| |||||   ||||| ||| ||||||||||||||| ||||||    
T  3956935 gatattcaatacattaagatttgtggcttttgaaaagtctggtatcaccttcaggaatcctgaatgtgagagtgtaacttcttttaaattaaccagatcc 3956836  T
Q  256 tgc 258  Q
    |||    
T  3956835 tgc 3956833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 3985627 - 3985729
Alignment:
Q  156 gatattcaatactttcagatttgtagcttttgaaaggtctggcaactccatcagggatcgtgaatcaaagagtctaaattcttttaaattaactagatcc 255  Q
    |||||||||||| || |||||| | |||||||||| |||||| |||||| |||||  |  ||||  | ||||| ||| |||||||||||||| |||||||    
T  3985627 gatattcaataccttaagatttatggcttttgaaaagtctggtaactccttcaggtcttctgaaaaagagagtgtaacttcttttaaattaattagatcc 3985726  T
Q  256 tgc 258  Q
    |||    
T  3985727 tgc 3985729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 4000905 - 4000951
Alignment:
Q  151 tctgtgatattcaatactttcagatttgtagcttttgaaaggtctgg 197  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||    
T  4000905 tctgtgatattcaataccttaagatttgtagcttttgaaaagtctgg 4000951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 3934619 - 3934570
Alignment:
Q  161 tcaatactttcagatttgtagcttttgaaaggtctggcaactccatcagg 210  Q
    |||||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  3934619 tcaatactttaagatttgtggcttttgaaaagtctggcaactccttcagg 3934570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 464
Target Start/End: Complemental strand, 3964757 - 3964684
Alignment:
Q  391 atgacaagtcaaatataacaagattctccgcagaaaacttctttggcaatgattttagagggtagtgcatccaa 464  Q
    |||||||||| |||||||| || |||||||| ||||| |  | |||||||||||| | |||||| |||||||||    
T  3964757 atgacaagtccaatataacgagtttctccgctgaaaattcatctggcaatgatttcaaagggtaatgcatccaa 3964684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 289 - 465
Target Start/End: Original strand, 13396740 - 13396916
Alignment:
Q  289 ttaagtaattaattgcaaactccttgaatttagacaaatttaatctggaagatacatattcaattaccttcactccacaccaaagcttttctaattggct 388  Q
    ||||||||||||||   || |||||||||| ||| |||||||||||| |||| || |||||||||||||  ||||||||||||||||||||||   ||||    
T  13396740 ttaagtaattaatttataattccttgaattaagataaatttaatctgaaagacacgtattcaattacctgtactccacaccaaagcttttctacaaggct 13396839  T
Q  389 aaatgacaagtcaaatataacaagattctccgcagaaaacttctttggcaatgattttagagggtagtgcatccaat 465  Q
    | ||| |||| | | |||||||||||| ||  |||||||||||| ||| ||||||||||||||||| ||||||||||    
T  13396840 atatggcaagcccagtataacaagattatcaacagaaaacttctctgggaatgattttagagggtaatgcatccaat 13396916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 13396601 - 13396702
Alignment:
Q  157 atattcaatactttcagatttgtagcttttgaaaggtctggcaactccatcagggatcgtgaatcaaagagtctaaattcttttaaattaactagatcct 256  Q
    ||||||||||| || |||||||| || ||||||| |||||| |||||| ||||| ||  |||||   ||||| ||| || ||||||||||||||||||||    
T  13396601 atattcaataccttaagatttgtggcgtttgaaaagtctggtaactccttcaggtattttgaatggcagagtgtaacttgttttaaattaactagatcct 13396700  T
Q  257 gc 258  Q
    ||    
T  13396701 gc 13396702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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