View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14978_high_5 (Length: 206)
Name: NF14978_high_5
Description: NF14978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14978_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 35409501 - 35409325
Alignment:
| Q |
15 |
atgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatggggtttcaccatatgaattgctaataccta |
114 |
Q |
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| T |
35409501 |
atgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatggagtttcaccatatgaattgttaataccta |
35409402 |
T |
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| Q |
115 |
gctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatgcgaagaaagacc |
191 |
Q |
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| T |
35409401 |
gctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatgcgaagaaagacc |
35409325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 35408139 - 35407975
Alignment:
| Q |
15 |
atgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatggggtttcaccatatgaattgctaataccta |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||| | |
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| T |
35408139 |
atgaaaaatattgagaaggagattgacagaagaaatatcgatccaaaacttaggaatcgatgtggccatggagtttcaccatatgaactgcttataccaa |
35408040 |
T |
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| Q |
115 |
gctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatg |
179 |
Q |
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| T |
35408039 |
gctcgggatgcggtgccactggacgatgggtgccaaatagtgcaacagcctagcagtttaatatg |
35407975 |
T |
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