View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14978_low_1 (Length: 510)
Name: NF14978_low_1
Description: NF14978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14978_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 327
Target Start/End: Complemental strand, 2972967 - 2972657
Alignment:
| Q |
2 |
gacgatccatctccggaaagtggaccccaccaatctcagccggaaacccggttcagtaaatgaaatccggttttcacgtctcggagataattacgattac |
101 |
Q |
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| T |
2972967 |
gacgatccatctccggaaagtggaccccaccaatctcagccggaaacccggttcagtaaatgaaatccggttttcacgtctcggagataattacgattac |
2972868 |
T |
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| Q |
102 |
aaattataagtaatgaataaataaattattaatactatactatactatagattatagaatatggttttcacaatgatggagaatgaaactaagaaagcac |
201 |
Q |
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| T |
2972867 |
aaattataaat------------aattattaatactatacta---tatagattatagaatatggttttcacaatgatggagaatgaaactaagaaagcac |
2972783 |
T |
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| Q |
202 |
taaacattaacatgaaatgtgtttactaattttgattatannnnnnnnnctctctggctgccttgactttgacgccaattaagtttatttaatgtgtatg |
301 |
Q |
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| T |
2972782 |
taaacattaacatgaaatgtgtttactaattttgattatatttttttttctctctggctgccttgactttgacgccaattaagtttatttaatgtgtatg |
2972683 |
T |
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| Q |
302 |
atgcaagtacaccttatcaatttgca |
327 |
Q |
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| T |
2972682 |
atgcaagaacaccttatcaatttgca |
2972657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 2972573 - 2972533
Alignment:
| Q |
407 |
ctaggtacttttgtttacttccacgtttaaggtattacatc |
447 |
Q |
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| T |
2972573 |
ctaggtacttttgtttacttccacgtttaaggtgttacatc |
2972533 |
T |
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