View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14978_low_3 (Length: 433)
Name: NF14978_low_3
Description: NF14978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14978_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 34 - 279
Target Start/End: Complemental strand, 45937098 - 45936853
Alignment:
| Q |
34 |
tagaccataattagtactactaaatataattatatgtaattatgaactaattaatcaattaaattgcttacgttccaacatataatttctcccgaagaaa |
133 |
Q |
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| T |
45937098 |
tagaccataattagtactactaaatataattatatgtaattatgaactaattaatcaattaaattgcttacgttccaacatataatttctcccgaagaaa |
45936999 |
T |
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| Q |
134 |
agcccagctaataaaagctgtgatgataagctgcaagggggtaaatacagagacataaagaggcccttttctctcaatggtccaagaaattatacaataa |
233 |
Q |
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| T |
45936998 |
agcccagctaataaaagctgtgatgataagctgcaagggggtaaatacagagacataaagaggcccttttctctcaatggtccaagaaattatacaataa |
45936899 |
T |
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| Q |
234 |
gaaagcccggtgcaaattattccctgaaaacaaaattagtaccatc |
279 |
Q |
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| T |
45936898 |
gaaagcccggtgcaaattattccctgaaaacaaaattagtaccatc |
45936853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 296 - 419
Target Start/End: Complemental strand, 45936802 - 45936679
Alignment:
| Q |
296 |
gagtaagtacaaatttaaattatgtgatcaaccaataaaagatttaatgaatgtaccgcataaagagaagaggtaagtctcatagcatcactgagtgacc |
395 |
Q |
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| T |
45936802 |
gagtaagtacaaatttaaattatgtgatcaaccaataaaagatttaatgaatgtaccgcataaagagaagaggtaagtctcatagcatcactgagtgacc |
45936703 |
T |
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| Q |
396 |
aagatgagactctatggtcaaaac |
419 |
Q |
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| T |
45936702 |
aagatgagactctatggtcaaaac |
45936679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 10562608 - 10562486
Alignment:
| Q |
105 |
gttccaacatataatttctcccgaagaaaagcccagctaataaaagctgtgatgataagctgcaagggggtaaatacagagacataaagaggcccttttc |
204 |
Q |
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| T |
10562608 |
gttccaacgtataatttctcctgaataaaagcccagctaataaaagctgtgaggataagctgcaagggagtaaatacagacacataaagaggaccttttc |
10562509 |
T |
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| Q |
205 |
tctcaatggtccaagaaattata |
227 |
Q |
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| T |
10562508 |
tcccaatggtccatgaaattata |
10562486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 10562450 - 10562389
Alignment:
| Q |
358 |
aagagaagaggtaagtctcatagcatcactgagtgaccaagatgagactctatggtcaaaac |
419 |
Q |
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| T |
10562450 |
aagagaagaggcaagtctcatagcatcatgcagtgaccaagctgagacactatgatcaaaac |
10562389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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