View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14978_low_4 (Length: 300)
Name: NF14978_low_4
Description: NF14978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14978_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 25607858 - 25607583
Alignment:
| Q |
10 |
aataatatgatgtgtatgtgaacgtgtattagttatagtatttataactttatatccaatgaccaatggtttacatgatataatatctttattgctgcta |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25607858 |
aatattatgatgtgtatgtgaacgtgtattagttatagtatttataactttatatccaatgaccaatggtttacatgatataatatctttattgctgcta |
25607759 |
T |
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| Q |
110 |
acttctctgattatgatcagccctttatagctgcaaactttatgaattatgatgcagataagtaattaggtgaaatgattatatgtatttaagacatcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25607758 |
acttctctgattatgatcagccctttatagctgcaaactttatgaattatgatgcagataagtaattaggtgaaatgattatatgtatttaagacatcat |
25607659 |
T |
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| Q |
210 |
agcaccttaaggcacaaatcatcaactaaccctgccaattttattcatcaaaattcgcctaattatgcttaaagtt |
285 |
Q |
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| T |
25607658 |
agcaccttaaggcacaaatcatcaactaaccctgccaattttattcatcaaaattcgcctaattatgcttaaagtt |
25607583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 285
Target Start/End: Complemental strand, 25862939 - 25862748
Alignment:
| Q |
84 |
atgatataatatctttattgctgctaacttctctgattatgatcagccctttatagctgcaaactttatgaattatgatgcagataagtaattaggtgaa |
183 |
Q |
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| T |
25862939 |
atgatataatatctttattgctgctaacttgtctgattataatcagccctttatagctgcaaactttataaattatgatgcagataagtaattaggtgaa |
25862840 |
T |
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| Q |
184 |
atgattatatgtatttaagacatcatagcaccttaaggcacaaatcatcaactaaccctgccaattttattcatcaaaattcgcc---taattatgctta |
280 |
Q |
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| T |
25862839 |
atgattata-------aa------atagcaccttaagtcataaaccatcaactaaccatgccaattttattcatcaaaattcaccaaataattatgctta |
25862753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 84 - 285
Target Start/End: Complemental strand, 25888679 - 25888488
Alignment:
| Q |
84 |
atgatataatatctttattgctgctaacttctctgattatgatcagccctttatagctgcaaactttatgaattatgatgcagataagtaattaggtgaa |
183 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25888679 |
atgatataatatctttattgctgctaacttgtctgattataatcagccctttatagctgcaaactttataaattatgatgcagataagtaattaggtgaa |
25888580 |
T |
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| Q |
184 |
atgattatatgtatttaagacatcatagcaccttaaggcacaaatcatcaactaaccctgccaattttattcatcaaaattcgcc---taattatgctta |
280 |
Q |
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| T |
25888579 |
atgattata-------aa------atagcaccttaagtcataaaccatcaactaaccatgccaattttattcatcaaaattcaccaaataattatgctta |
25888493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 84 - 285
Target Start/End: Original strand, 25481092 - 25481283
Alignment:
| Q |
84 |
atgatataatatctttattgctgctaacttctctgattatgatcagccctttatagctgcaaactttatgaattatgatgcagataagtaattaggtgaa |
183 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25481092 |
atgatataatatctttattgctgctaacttgtctgattatgatcagcactttatagcagcaaactttatgaattatgatgcagataagtaattaggtgaa |
25481191 |
T |
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| Q |
184 |
atgattatatgtatttaagacatcatagcaccttaaggcacaaatcatcaactaaccctgccaattttattcatcaaaattcgcc---taattatgctta |
280 |
Q |
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| T |
25481192 |
atgattata-------aa------atagcaccttaagtcataaaccatcaactaaccatgccaattttattcatcaaaattcaccaaataataatgctta |
25481278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 25843693 - 25843647
Alignment:
| Q |
242 |
tgccaattttattcatcaaaattcgcc---taattatgcttaaagtt |
285 |
Q |
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| T |
25843693 |
tgccaattttattcatcaaaattcaccaaataattatgcttaaagtt |
25843647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 2460449 - 2460509
Alignment:
| Q |
212 |
caccttaaggcacaaatcatcaactaaccctgccaattttattcatcaaaattcgcctaat |
272 |
Q |
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| T |
2460449 |
caccttaagtcgcataccatcaactaaccctgccaattttattcatcaaaattcgcctaat |
2460509 |
T |
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