View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14979_high_17 (Length: 332)
Name: NF14979_high_17
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 45 - 315
Target Start/End: Original strand, 4946591 - 4946861
Alignment:
| Q |
45 |
ttcactttttcagtgcataccacgtcaaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaacttg |
144 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946591 |
ttcacttttccagtgcataccacatcaaatcgaatcgaatttttaggaaagaaactgaagatgatgcaaattatgtcccctatctatgtgcctgaacttg |
4946690 |
T |
|
| Q |
145 |
taagcatactactgtcaaagatcacctatcttaaaattcttaaactcttaagtaatcataactatagctgaacttgaaatattaaagtgattcatcttag |
244 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946691 |
taagcatactactgtcaaagatcgcctatcttaaaattcttaaactcttaagtaatcataactatagctgaacttgaaatattaaagtgattcatcttag |
4946790 |
T |
|
| Q |
245 |
aatcctagttctcgaataatttttggccaaacattattttctggtcgaactttggattatgatgtttactc |
315 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4946791 |
aatcctagctctcgaataatttttggccaaacattattttctggtcgaactttggattatgatgtttactc |
4946861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University