View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_high_23 (Length: 266)
Name: NF14979_high_23
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_high_23 |
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| [»] scaffold0274 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0274 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 9588 - 9321
Alignment:
| Q |
1 |
gttaccagcttccattcttatctgccgaggactacacttggaggacaacttcacttgaaaattcaatgagtttggcaaaactagtgctctgaaactcctg |
100 |
Q |
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| T |
9588 |
gttaccagcttccattcttatccgccgaggactacacttggaggacaacttcacttgaaaattcaatgagtttggcaaaactagtgctctgaaactcctg |
9489 |
T |
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| Q |
101 |
caaaagaaaaaccattccttatagaagcagaatttaaaaagaacac--aaaccaaaaatcagaaatcttttccaacatgacattggtgcgttgatcaatc |
198 |
Q |
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| T |
9488 |
caaaagaaaaaccattccttatagaagcagaatttaaaaagaacacaaaaaccaaaaaacagaaatctgttcgaacaggacattggtgcgttgatcaatc |
9389 |
T |
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| Q |
199 |
gttactatattgtgtcatgtatcaagcaaaagtaaacnnnnnnnngaaccaacttcataaactacttc |
266 |
Q |
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| T |
9388 |
gttactatattgtgtcatgtatcaagaaaaagtaaacaaaaaaaagaaccaacatcataaactacttc |
9321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 773 - 1040
Alignment:
| Q |
1 |
gttaccagcttccattcttatctgccgaggactacacttggaggacaacttcacttgaaaattcaatgagtttggcaaaactagtgctctgaaactcctg |
100 |
Q |
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| T |
773 |
gttaccagcttccattcttatccgccgaggactacacttggaggacaacttcacttgaaaattcaatgagtttggcaaaactagtgctctgaaactcctg |
872 |
T |
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| Q |
101 |
caaaagaaaaaccattccttatagaagcagaatttaaaaagaacac--aaaccaaaaatcagaaatcttttccaacatgacattggtgcgttgatcaatc |
198 |
Q |
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| T |
873 |
caaaagaaaaaccattccttatagaagcagaatttaaaaagaacacaaaaaccaaaaaacagaaatctgttcgaacaggacattggtgcgttgatcaatc |
972 |
T |
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| Q |
199 |
gttactatattgtgtcatgtatcaagcaaaagtaaacnnnnnnnngaaccaacttcataaactacttc |
266 |
Q |
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| T |
973 |
gttactatattgtgtcatgtatcaagaaaaagtaaacaaaaaaaagaaccaacatcataaactacttc |
1040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41421562 - 41421326
Alignment:
| Q |
1 |
gttaccagcttccattcttatctgccgaggactacacttggaggacaacttcacttgaaaattcaatgagtttggcaaaactagtgctctgaaactcctg |
100 |
Q |
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| T |
41421562 |
gttaccagcttccattcttatccgccgaggactacacttggaggacaacttcacttgaaaattcaatgagttaggaaaaactagtgctctgaaactcctg |
41421463 |
T |
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| Q |
101 |
caaaagaaaaaccattccttatagaagcagaatttaaaaagaacac--aaaccaaaaatcagaaatcttttccaacatgacattggtgcgttgatcaatc |
198 |
Q |
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| T |
41421462 |
caaaagaaaaaacattccttatagaagcagaatttaaaaagaacacaaaaaccaaaaaacagaaatcttttccaacaggatatcagtacattgatcaatc |
41421363 |
T |
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| Q |
199 |
gttactatattgtgtcatgtatcaagcaaaagtaaac |
235 |
Q |
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| T |
41421362 |
attactatattgtgtcatgcatcaagcaaaagtaaac |
41421326 |
T |
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