View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_high_25 (Length: 236)
Name: NF14979_high_25
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 40973421 - 40973212
Alignment:
| Q |
17 |
agtctagagtatatggaccaagctctgcaaatannnnnnngtaaacaaaatacaataaatgacagagaagagaataacaaaattatttcatgtgaagaaa |
116 |
Q |
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| T |
40973421 |
agtctagagtatatggaccaagctctgcaaatatttttt-gtaaacaaaatacaataaatgacagagaagagaataacaaaattatttcatgtgaagaaa |
40973323 |
T |
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| Q |
117 |
ggttttgtgcatcagtatnnnnnnntatatattgtggaataaaactaggcctatatcaagtgtacatcaacttttttgcaatccaaacaattataacaac |
216 |
Q |
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| T |
40973322 |
ggttttgtgcatcagtataaaaaaatatatattgtggaataaaactaggcctatatcaagtggacatcaacttttttgcaatccaaacaattataacaac |
40973223 |
T |
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| Q |
217 |
agtgcttcatc |
227 |
Q |
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||||||||||| |
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| T |
40973222 |
agtgcttcatc |
40973212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 40955342 - 40955273
Alignment:
| Q |
65 |
aatacaataaatgacagagaagagaataacaaaattatttcatgtgaagaaaggttttgtgcatcagtat |
134 |
Q |
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|||||| |||| ||||||||||| || ||||||||| |||| ||||||||||||| ||||||||||||| |
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| T |
40955342 |
aatacagtaaacgacagagaagataagaacaaaattgtttccagtgaagaaaggttatgtgcatcagtat |
40955273 |
T |
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