View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_high_7 (Length: 488)
Name: NF14979_high_7
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 17983234 - 17983694
Alignment:
| Q |
18 |
gaagacaacgctggtgatggcaacactgatgatgataacgacagccatgacgagtatgaggatgacggggacatcgatgagccagatgatggcgatgatg |
117 |
Q |
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| T |
17983234 |
gaagacaacgctggtgatggcaacactgatgatgacaacgacagccatgacgagtacgaggatgacggggacatcaatgagccagatgatggcgatgatg |
17983333 |
T |
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| Q |
118 |
acgacgacaacaatgatagtaggttaatctcaaatctttcacnnnnnnngagattaattccaaacggaatttacgacattgaagaaatgcattctgatta |
217 |
Q |
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| T |
17983334 |
acgacgacgacaatgatcgtaggttaatcacaaatattttacaaaaaaagagattaattccaaacggaatttacgacattgaagaaatgcatgctgatta |
17983433 |
T |
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| Q |
218 |
tcgagaattggtggatccaaataacgtttttacctttgatggtcatgattattatcattataaagatgaagatatagatgaagctgaggaggttgatgat |
317 |
Q |
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| T |
17983434 |
tcgagaattggtggatccaaataatatttttacctttgatggtcgtgattattatcattataaagatgaagatatagatgaagctgaggaggttgatgat |
17983533 |
T |
|
| Q |
318 |
ggcaaagaggaaaaggacgacgaggatgataagggacagtcctgaaattctttgttatgttaaaaattatgagaataaatattgattaataataaaactt |
417 |
Q |
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| T |
17983534 |
ggcaaagaggaaaaggatgacgactatgataagggacagtcctgaaattctttgttctgttaaaaattatgagaataaatattgattaataataaaactt |
17983633 |
T |
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| Q |
418 |
tatcttaacttctctttttgcttaagtttattttttcttcagtcatcataagaattatcta |
478 |
Q |
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| T |
17983634 |
tatcttaacttctctttttgcttaagttttttttttcttcagtcatcataagaattatcta |
17983694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 17975594 - 17976044
Alignment:
| Q |
18 |
gaagacaacgctggtgatggcaacactgatgatgataacgacagccatgacgagtatgaggatgacggggacatcgatgagccagatgatggcgatgatg |
117 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
17975594 |
gaagactacgctggtgatggcaacactgatgatgacaacgacagccatgtcgagtacgaggatgacggggacatcaatgagttagatgatggcgatgatg |
17975693 |
T |
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| Q |
118 |
acgacgacaacaatgatagtaggttaatctcaaatctttcacnnnnnnngagattaattccaaacggaatttacgacattgaagaaatgcattctgatta |
217 |
Q |
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| T |
17975694 |
acgacgacgacaatgattgtaaattaatctcaaatattttacaaaaaaagagattaattccaaacggaatttacgacattgaagaaatgcatgctgatta |
17975793 |
T |
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| Q |
218 |
tcgagaattggtggatccaaataacgtttttacctttgatggtcatgattattatcattataaagatgaagatatagatgaagctgaggaggttgatgat |
317 |
Q |
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| T |
17975794 |
tcgagaattggtggattcaaacgacatttttacctttgatggtcgtgattactatcatgttcaagatgaagctatagatgaagctgaggaggttgatgat |
17975893 |
T |
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| Q |
318 |
ggcaaagaggaaaaggacgacgaggatgataagggacagtcctgaaattctt-----tgttatgttaaaaattatgagaataaatattgattaa---taa |
409 |
Q |
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|||||||| |||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17975894 |
ggcaaagaagaaacagacgacgacgatgataagggacagtcctgaaattctttgttatgttatgttaaaaattatgagaataaatattgattaatattaa |
17975993 |
T |
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| Q |
410 |
taaaactttatcttaacttctctttttgcttaagtttattttttcttcagtc |
461 |
Q |
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| T |
17975994 |
taaaactttatctcaacttctctttttgc-taagattgttttttcttcagtc |
17976044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 251 - 467
Target Start/End: Original strand, 17986787 - 17987013
Alignment:
| Q |
251 |
ctttgatggtcatgattattatcattataaagatgaagat-ata-----gatgaagctgaggaggttgatgatggcaaagaggaaaaggacgacga---g |
341 |
Q |
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| T |
17986787 |
ctttgatggtcatgattattatcatgttaaagatgaagatgatacttatgatgaagctgaagaggttgatgatggcaaagaggagaaggacgacgaagag |
17986886 |
T |
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| Q |
342 |
gatgataagggacagtcctgaaattctttgttatgttaaaaattatgagaataaatattgattaataataaaactttatcttaacttctctttttgctta |
441 |
Q |
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| T |
17986887 |
gatgataaggaacagtcctgaaattctttgttatgtaaaaaattatgagaataaatattgattaataat-aaactttatctcaacttctctttttgc-ta |
17986984 |
T |
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| Q |
442 |
agtttatttttt---cttcagtcatcata |
467 |
Q |
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| T |
17986985 |
agttttttttttttccttcagtcatcata |
17987013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 13148475 - 13148547
Alignment:
| Q |
203 |
aatgcattctgattatcgagaattggtggatccaaataacgtttttacctttgatggtcatgattattatcat |
275 |
Q |
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| T |
13148475 |
aatgcatgctgattatcgtgaatgggtggaccctaacaacatttttagccatgatgatcatgattattatcat |
13148547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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