View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_11 (Length: 416)
Name: NF14979_low_11
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 58 - 401
Target Start/End: Original strand, 34819092 - 34819435
Alignment:
| Q |
58 |
agatcaagtattgaagcctttgtaagagtagttaaccctctggcagagaacttggtgcaaattctagctcaagagctgaacataaacttcagctatttcc |
157 |
Q |
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| T |
34819092 |
agatcaagtattgaatcttttgtaaaagtagttacccctctggcagagaacttggtgcaaattctagctcaagagctgaacataaacttcagctatttcc |
34819191 |
T |
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| Q |
158 |
aacataattgttcagcaaatactagttatcttcgcttgaatagatatccaccatttccatttccttcaaaggtgattggccttttacctcatgctgatac |
257 |
Q |
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| T |
34819192 |
aacagaattgttcagcaaatactagttatcttcgcttgaatagatatccaccatgtccatttccttcaaaggtgattggccttttacctcatgctgatac |
34819291 |
T |
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| Q |
258 |
tagtttcattactatagttcatcaagatcatattgggggattgcaattaatgaaagatggaaagtggattggtgtcaaacctaattctgaagctctcatt |
357 |
Q |
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| T |
34819292 |
tagtttcattactatagttcatcaagatcatattgggggattgcaattaatgaaagatggaaagtggattagtgtcaaacctaattctgaagctctcatt |
34819391 |
T |
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| Q |
358 |
gttaatgttggagatttatttcaggtaattaatgatctttttac |
401 |
Q |
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| T |
34819392 |
gttaatgttggagatttattccaggtaattaatgatctttttac |
34819435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 34844342 - 34844251
Alignment:
| Q |
292 |
gggggattgcaattaatgaaagatggaaagtggattggtgtcaaacctaattctgaagctctcattgttaatgttggagatttatttcaggt |
383 |
Q |
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| T |
34844342 |
gggggattgcaattgatgaaagatggaaaatgggttgatgtcaagcctaatccaagtgctctagttgttaatattggtgatttatttcaggt |
34844251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34819034 - 34819072
Alignment:
| Q |
1 |
atttaaggtaacatctatatatttgttaacctctaataa |
39 |
Q |
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| T |
34819034 |
atttaaggtaacatctatatatttgttaatctctaataa |
34819072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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