View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_12 (Length: 395)
Name: NF14979_low_12
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_12 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 77 - 378
Target Start/End: Original strand, 114350 - 114651
Alignment:
| Q |
77 |
gtcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacacagtctgtaatggattc |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114350 |
gtcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacacagtctgtaatggattc |
114449 |
T |
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| Q |
177 |
aaataaagatggtaatattaccaaagatgttcacgactcagagcctatccatccaaataaaagtggtagagattgtgcttctacttcacaacctagtaat |
276 |
Q |
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| T |
114450 |
aaataaagatggtaatattaccaaagatgttcacgactcagagcctatccatccaaataaaagtggtagagattgtgcttctacttcacaacctagtaat |
114549 |
T |
|
| Q |
277 |
gtccccttaccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaagaagata |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114550 |
gtccccttaccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaagaagata |
114649 |
T |
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| Q |
377 |
tc |
378 |
Q |
| |
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|| |
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| T |
114650 |
tc |
114651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 230 - 374
Target Start/End: Complemental strand, 33821437 - 33821287
Alignment:
| Q |
230 |
caaataaaagtggtagagattgtgcttctacttcacaac-----ctag-taatgtccccttaccgtgtgcaatgtggtcggacaatttatggaacctggg |
323 |
Q |
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| T |
33821437 |
caaatcaaattggtagagattgtgcttctgcttcacaacaaagtctaggtaatgttcccgtaccatgtggaatgtggtcggacagtttatggaacttggg |
33821338 |
T |
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| Q |
324 |
ggagcaagtaggcaatgacagaatttgctcatactcttcattacaagaaga |
374 |
Q |
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| T |
33821337 |
ggaacaagtaaacattgacaaaattggctcatgctcttcgttacaagaaga |
33821287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 371
Target Start/End: Complemental strand, 33733950 - 33733813
Alignment:
| Q |
240 |
tggtagagattgtgcttctacttcacaacctagta------atgtccccttaccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagta |
333 |
Q |
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| T |
33733950 |
tggtagagactgtgcttctgcttcacaaccaagtatagataatgttccaataccgtgtgcattgtcgtcggacaatttatgggacttgggtgaacaagta |
33733851 |
T |
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| Q |
334 |
ggcaatgacagaatttgctcatactcttcattacaaga |
371 |
Q |
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| T |
33733850 |
ggcagtgagcaaattggctcaggctcttcaatacaaga |
33733813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 33865821 - 33865739
Alignment:
| Q |
78 |
tcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacac |
160 |
Q |
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| T |
33865821 |
tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaatgggaaatataataattttgtgacac |
33865739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 371
Target Start/End: Complemental strand, 33762458 - 33762371
Alignment:
| Q |
284 |
taccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagtaggcaatgacagaatttgctcatactcttcattacaaga |
371 |
Q |
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| T |
33762458 |
taccatgtgcaatgttgaccgataatttgtggaacttgggggagccagtagacagtgagaaaattggctcatgctcttcattacaaga |
33762371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 33762702 - 33762589
Alignment:
| Q |
79 |
catgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacacagtctgtaatggattcaa |
178 |
Q |
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||||| ||||||||||||||||||| || ||||||| || |||| || ||||| || | ||| || || |||||| ||||| | ||| ||| ||||| |
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| T |
33762702 |
catgaagttattaaacctcaacctcgaattttttcaactcattcaccatggttgaacaagaagcaaaataattttgttacacaaccagtactggcttcaa |
33762603 |
T |
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| Q |
179 |
ataaagatggtaat |
192 |
Q |
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| T |
33762602 |
ataaagatggtaat |
33762589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 5471497 - 5471597
Alignment:
| Q |
240 |
tggtagagattgtgcttctacttcacaaccta------gtaatgtccccttaccgtgtgcaatgtggtcggacaatttatggaacctgggggagcaagta |
333 |
Q |
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||||| ||||||||||||| |||||||||| | |||||||||| |||| ||| |||||||||| || | |||||||||| |||||||||||||| |
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| T |
5471497 |
tggtaaagattgtgcttcttcttcacaaccaattctaggtaatgtcccaataccttgtacaatgtggtcagaaagtttatggaacttgggggagcaagta |
5471596 |
T |
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| Q |
334 |
g |
334 |
Q |
| |
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| T |
5471597 |
g |
5471597 |
T |
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