View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_13 (Length: 394)
Name: NF14979_low_13
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 4946190 - 4946434
Alignment:
| Q |
19 |
taaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaannnnnnnnnnnntataagatgaccatagaacccatagtttgactaaatttaacgag |
118 |
Q |
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| T |
4946190 |
taaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaaagagagag----tataagatgactatagaacccatagtttgactaaatttaacgag |
4946285 |
T |
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| Q |
119 |
tgaaaagggatcagccacattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgactctatat |
218 |
Q |
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| T |
4946286 |
tgaaaagggatcagccgcattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgactc--tat |
4946383 |
T |
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| Q |
219 |
aaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
269 |
Q |
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| T |
4946384 |
aaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
4946434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 4946490 - 4946537
Alignment:
| Q |
326 |
aggtatcctatttaactcgtaatctgctctttcttgtagggttgtctt |
373 |
Q |
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| T |
4946490 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctt |
4946537 |
T |
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