View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_16 (Length: 366)
Name: NF14979_low_16
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 17832159 - 17832005
Alignment:
| Q |
1 |
taatgagggaatgacagagttaatatcatataagttgagtctgtcattccttgtaaaaaattggattcgtataaaaaattgtagtgtgaattcctaaata |
100 |
Q |
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| T |
17832159 |
taatgagggaatgacagagttaatatcgtataagttgagtctgtcattccttgtaaaaaattggattcgtattaaaagttgtagcgtgaattcctaaata |
17832060 |
T |
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| Q |
101 |
ataatggtttaatataattctcattatacgaattaaacataatttgattgacatg |
155 |
Q |
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| T |
17832059 |
ataatggtttaatataattctcattatacgaattaaacataatttgattgacatg |
17832005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 17831886 - 17831752
Alignment:
| Q |
234 |
gacaaagtggtggtagagatttgcaaatgagaggaaaaattgtgagag--ggagtacctaacactgatgtaacacgttccattccattcttacctcaacc |
331 |
Q |
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| T |
17831886 |
gacaaagtggtggtagagatttgcaaatgagaggaaaaatagtgagagagggagtacctaacactgatgtaacacgttccattccattcttaccttaacc |
17831787 |
T |
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| Q |
332 |
aactaaattgaatcatcaccgaaatgaagaagaag |
366 |
Q |
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| T |
17831786 |
aactaaattgaatcatcaccgaaatgatgaagaag |
17831752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 7135920 - 7135786
Alignment:
| Q |
234 |
gacaaagtggtggtagagatttgcaaatgagaggaaaaattgtgagag--ggagtacctaacactgatgtaacacgttccattccattcttacctcaacc |
331 |
Q |
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| T |
7135920 |
gacaaagtggtggtagagatttgcaaatgagaggaaaaatagtgagagagggagtacctaacaccgatgtaacacgttccattccattcttacctcaacc |
7135821 |
T |
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| Q |
332 |
aactaaattgaatcatcaccgaaatgaagaagaag |
366 |
Q |
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| T |
7135820 |
aactaaatcgaatcgtcaccgaaatggagaagaag |
7135786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 52525206 - 52525326
Alignment:
| Q |
237 |
aaagtggtggtagagatttgcaaatgagaggaaaaattgtgagag--ggagtacctaacactgatgtaacacgttccattccattcttacctcaaccaac |
334 |
Q |
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| T |
52525206 |
aaagtggtggtagagatttgcaaatgagcggaaaaacagtgagagagggagtgcctaac-----------acgttccattccattcttacctcaatcgac |
52525294 |
T |
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| Q |
335 |
taaattgaatcatcaccgaaatgaagaagaag |
366 |
Q |
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| T |
52525295 |
gaaattgaatcgtcatcgaaatggagaagaag |
52525326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 52525038 - 52525071
Alignment:
| Q |
121 |
tcattatacgaattaaacataatttgattgacat |
154 |
Q |
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| T |
52525038 |
tcattatacgaattaaacataatctgattgacat |
52525071 |
T |
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