View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_17 (Length: 360)
Name: NF14979_low_17
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 77 - 346
Target Start/End: Original strand, 3616521 - 3616789
Alignment:
| Q |
77 |
cttataatatgagacgaaattgagggaaataatggatgtcaatttgtcatgtgtaacaagaaacataatgagccccccgtgtaatacccttttacaaata |
176 |
Q |
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| T |
3616521 |
cttataatatgagacgaaattgaggaaaataaggggtgtcaatttctcatgtgtaacaagaaacataatgagcctcc-gtgtaatacccttttacaaata |
3616619 |
T |
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| Q |
177 |
acaacaatgtataaacccaaaacaataatgataacaggaattcaaacaatgacaccaacaaaaatttcaaccttgtacgattcatcttcccatgaacctc |
276 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3616620 |
acaacaatgtataaacccaaaacaataatgataataggaattcaaacaatgacaccaacaaaaatttcaaccttgtacgattcatcttcccatgaacctc |
3616719 |
T |
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| Q |
277 |
tatttttgactcatattcttttactcatatttaatttggtatagattatttatttttaagagaaataatt |
346 |
Q |
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| T |
3616720 |
tatttttgactcatattctcttactcatatttaatttggtatagattatttatttttaagagaaataatt |
3616789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 29067947 - 29068011
Alignment:
| Q |
175 |
taacaacaatgtataaacccaaaacaataatgataacaggaattcaaacaatgacaccaacaaaa |
239 |
Q |
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| T |
29067947 |
taacaacaatgcataaacccaaatccacaatgataactagaattccaacaacgacgccaacaaaa |
29068011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 34003831 - 34003910
Alignment:
| Q |
168 |
ttacaaataacaacaatgtataaacccaaaacaataatgataacaggaattcaaacaatgacaccaacaaaaatttcaac |
247 |
Q |
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||||| |||||||| ||| ||||||| |||| | |||||||||| |||||| |||||||||||||||||||||| |||| |
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| T |
34003831 |
ttacatataacaacgatgcataaaccaaaaaggacaatgataacaagaattccaacaatgacaccaacaaaaattccaac |
34003910 |
T |
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