View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_18 (Length: 354)
Name: NF14979_low_18
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 354
Target Start/End: Original strand, 34818681 - 34819023
Alignment:
| Q |
12 |
gagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttttttccaagttgtgaatcatggagtttcacaagaggtgctaaagaacatgca |
111 |
Q |
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| T |
34818681 |
gagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttttttccaagttgtgaatcatggagtttcacaagaggtgctaaagaacatgca |
34818780 |
T |
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| Q |
112 |
gtttgaagaaaaggaagtgttccgaacaccttttggaattaaatcacaagagaattttttgaacttgccttctagaacttataggtggggcaatgcttct |
211 |
Q |
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| T |
34818781 |
gtttgaagaaaaggaagtgttccgaacaccttttggaattaaatcacaagagaattttttgaacttgccttctagaacttataggtggggcaacgcttct |
34818880 |
T |
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| Q |
212 |
gccattaatccaaaacaacttatgtggtcagaagcattacacatgtttcttcctgatatagaaaaaatggaccaacacaaaagtttgaggtagatatata |
311 |
Q |
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| T |
34818881 |
gccattaatccaaaacaacttatgtggtcagaagcattacacatatttcttcctgatatagaaaaaatggaccaacacaaaagtttgaggtagatatata |
34818980 |
T |
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| Q |
312 |
tctctttcgtagttcttacaatgcattgttatcatcatgtgtg |
354 |
Q |
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| T |
34818981 |
tctctttcatagtttttacaatgcattgttatcatcatgtgtg |
34819023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 34847906 - 34847858
Alignment:
| Q |
12 |
gagaagaatgcatgaaagaaatcactgaagctgctagaaaatggggttt |
60 |
Q |
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| T |
34847906 |
gagaagagtgcatgaaagaaataagtgaagctgctagtaaatggggttt |
34847858 |
T |
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