View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_20 (Length: 330)
Name: NF14979_low_20
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 481232 - 481526
Alignment:
| Q |
17 |
cataggtttgtatattgtactttggggtaaagctgaagatgtagttgaagtcaaagagaagacagatccaaagttgatgattattaatgagacagaggaa |
116 |
Q |
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| T |
481232 |
cataggtttgtatactgtactttggggtaaagctgaagatgtagctgaagtcaaagagaagacagatccaaagttgatgattattaatgagacagaggaa |
481331 |
T |
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| Q |
117 |
gggaatctttctataaatgaatcttgtgaaaaaacatattatgaaactgttttggaagaacctctgttacctgcttagtccacattactctattaattga |
216 |
Q |
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| T |
481332 |
gggaatctttttataaatgaatcttgtgaaaaaacatattatgaaactgttttggaagaacctctgttacctgcttagtccacattactctattaattga |
481431 |
T |
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| Q |
217 |
gggatttggatcctccaaacattaaaatgcattcgatcccccttataatgttaataagttgtagagcttaatacatacattttaatggtgagatt |
311 |
Q |
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| T |
481432 |
gggatttggatcctccaaacattaaaatgcattcgatcccccttataatgttaataagttgtagagcttaatacatacattttaatggtgagatt |
481526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 449647 - 449711
Alignment:
| Q |
24 |
ttgtatattgtactttggggtaaagctgaagatgtagttgaagtcaaagagaagacagatccaaa |
88 |
Q |
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| T |
449647 |
ttgtatattgtactttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaa |
449711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 469054 - 469097
Alignment:
| Q |
21 |
ggtttgtatattgtactttggggtaaagctgaagatgtagttga |
64 |
Q |
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| T |
469054 |
ggtttgtatattgtactttggggtaaagctgaagaagtagttga |
469097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 475616 - 475668
Alignment:
| Q |
36 |
ctttggggtaaagctgaagatgtagttgaagtcaaagagaagacagatccaaa |
88 |
Q |
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| T |
475616 |
ctttggggtaaagcggaagatgtagtccatgtcaaacagaagatagatccaaa |
475668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 27489336 - 27489283
Alignment:
| Q |
24 |
ttgtatattgtactttggggtaaagctgaagatgtagttgaagtcaaagagaag |
77 |
Q |
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| T |
27489336 |
ttgtatattgttctttggggaaaagctgaagatgtagttgatgtgaaagagaag |
27489283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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