View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14979_low_22 (Length: 296)

Name: NF14979_low_22
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14979_low_22
NF14979_low_22
[»] chr5 (3 HSPs)
chr5 (1-287)||(39952679-39952965)
chr5 (1-73)||(22917331-22917404)
chr5 (25-76)||(13596879-13596931)
[»] chr3 (2 HSPs)
chr3 (73-249)||(50416814-50416993)
chr3 (15-76)||(41053754-41053816)
[»] chr8 (3 HSPs)
chr8 (1-76)||(28940743-28940819)
chr8 (1-76)||(2680265-2680341)
chr8 (21-76)||(30344500-30344557)
[»] chr7 (4 HSPs)
chr7 (1-63)||(33097879-33097941)
chr7 (15-76)||(33105296-33105358)
chr7 (1-58)||(31299420-31299477)
chr7 (24-73)||(25731089-25731139)
[»] chr6 (2 HSPs)
chr6 (17-76)||(11681699-11681760)
chr6 (1-76)||(2627674-2627745)
[»] chr4 (2 HSPs)
chr4 (1-76)||(5482970-5483046)
chr4 (1-63)||(1967467-1967529)
[»] chr2 (3 HSPs)
chr2 (1-76)||(45003691-45003767)
chr2 (1-75)||(25123459-25123536)
chr2 (1-63)||(15084343-15084405)
[»] chr1 (3 HSPs)
chr1 (1-76)||(29693324-29693400)
chr1 (16-63)||(13624263-13624309)
chr1 (14-76)||(52037420-52037483)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 39952679 - 39952965
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952679 tttatgaaaaatggcaatgttctgtaatttgaacatctctccgttagagcaaatttttaaaaagtacgtaattcaaatgagaataaatcatcgattgtat 39952778  T
Q  101 aaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtc 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952779 aaactttgttgtgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggatatatctgataatgtgacatggatgtgtc 39952878  T
Q  201 tattattttagtgatatattgatgagaaagctagcatctaacttaactannnnnnnnnnncattcgcagagttattctttttcattt 287  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  39952879 tattattttagtgatatattgatgtgaaagctagcatctaacttaactatttttttttttcattcgcagagttattctttttcattt 39952965  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22917331 - 22917404
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaatt 73  Q
    |||| ||| |||||||||||   ||||||||||||||| ||| |||||||||| |||||||||| |||||||||    
T  22917331 tttacgaagaatggcaatgtcgcgtaatttgaacatctatcctttagagcaaattttttaaaaattacgtaatt 22917404  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 13596879 - 13596931
Alignment:
Q  25 taatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 76  Q
    |||||||||||||||||| |||||||||  |||||||||| ||||||||||||    
T  13596879 taatttgaacatctctcctttagagcaatttttttaaaaaatacgtaattcaa 13596931  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 73 - 249
Target Start/End: Complemental strand, 50416993 - 50416814
Alignment:
Q  73 tcaaatgagaataaatcatcgattgtataaactttgttttgatggttaacatcagaaaccatagcttgcaacatatttgggaaagactaaaagtttggat 172  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| ||    
T  50416993 tcaaatgagaataaattatagattgtataaactttgttgtgatggttaacatcagaaaccattgctttcaacatatctgggaaagactaaaagtttgcat 50416894  T
Q  173 atatctgataatgtgacatggatgtgtc---tattattttagtgatatattgatgagaaagctagcatctaacttaacta 249  Q
    ||||||||||| ||||||||| ||||||   ||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  50416893 atatctgataacgtgacatggctgtgtcatttattattttagtgttatattgatgtgaaagctagcatctaacttaacta 50416814  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 41053754 - 41053816
Alignment:
Q  15 caatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 76  Q
    |||||||| |||||||||||||||| |  |||||||||| |||||||||| || |||||||||    
T  41053754 caatgttccgtaatttgaacatctcacatttagagcaaattttttaaaaaatatgtaattcaa 41053816  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 28940819 - 28940743
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 76  Q
    |||| ||| |||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  28940819 tttacgaagaatgacaatgttctgtaatttgaacatctctcctttagaacaaattttttaaaaagtacgtaattcaa 28940743  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2680341 - 2680265
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttta-aaaagtacgtaattcaa 76  Q
    |||||||| || | |||| ||| ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||    
T  2680341 tttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 2680265  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 30344500 - 30344557
Alignment:
Q  21 tctgtaatttgaacatctctccattagagcaaa--tttttaaaaagtacgtaattcaa 76  Q
    |||||||||||||||||||||| ||||||| ||  ||||| |||| ||||||||||||    
T  30344500 tctgtaatttgaacatctctcctttagagctaatttttttgaaaaatacgtaattcaa 30344557  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33097941 - 33097879
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 63  Q
    |||| ||| |||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  33097941 tttacgaagaatgacaatgttccgtaatttgaacatctctcctttagagcaaattttttaaaa 33097879  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 33105296 - 33105358
Alignment:
Q  15 caatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 76  Q
    |||||||| ||||||||||||||||||  || |||||||||||| ||||| ||||||||||||    
T  33105296 caatgttccgtaatttgaacatctctcttttggagcaaatttttaaaaaaatacgtaattcaa 33105358  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31299420 - 31299477
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt 58  Q
    |||||||| |||| |||||||| ||||||| ||||||||||| ||||| |||||||||    
T  31299420 tttatgaagaatgacaatgttccgtaattttaacatctctcctttagaacaaattttt 31299477  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 25731089 - 25731139
Alignment:
Q  24 gtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaatt 73  Q
    ||||||||||||||||||| |||||||||  |||||||||| |||||||||    
T  25731089 gtaatttgaacatctctcctttagagcaatttttttaaaaaatacgtaatt 25731139  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 11681760 - 11681699
Alignment:
Q  17 atgttctgtaatttgaacatctctccattagagcaaattttt--aaaaagtacgtaattcaa 76  Q
    |||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||    
T  11681760 atgttctgtaatttgaacatctctcctttagagtaatttttttaaaaaagtacgtaattcaa 11681699  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 2627745 - 2627674
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaagtacgtaattcaa 76  Q
    |||| ||| ||| |||||||| |||||||||||||||||||   |||||||| ||||| |||| ||||||||||||    
T  2627745 tttacgaagaatagcaatgttatgtaatttgaacatctctc---tagagcaatttttttaaaa-tacgtaattcaa 2627674  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5482970 - 5483046
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt-aaaaagtacgtaattcaa 76  Q
    |||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||    
T  5482970 tttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaa 5483046  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1967529 - 1967467
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 63  Q
    |||| ||| |||| |||||||| ||||||||||||| ||||  ||| ||||||||||||||||    
T  1967529 tttacgaagaatgacaatgttccgtaatttgaacatttctcttttaaagcaaatttttaaaaa 1967467  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45003767 - 45003691
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttt-taaaaagtacgtaattcaa 76  Q
    |||||||| || | |||| ||| ||||||||||||||| ||| ||||||||||||||  ||||| ||||||||||||    
T  45003767 tttatgaagaacgacaatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaa 45003691  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 25123536 - 25123459
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaattttt---aaaaagtacgtaattca 75  Q
    |||| ||| |||| |||||||| ||||||||||||||||||  || ||||||||||||   ||||| |||||||||||    
T  25123536 tttacgaagaatgacaatgttccgtaatttgaacatctctcatttggagcaaatttttttaaaaaaatacgtaattca 25123459  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15084405 - 15084343
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 63  Q
    |||| ||| ||| ||||||||| ||||||||||||| ||||| |||||| ||| |||||||||    
T  15084405 tttacgaagaatagcaatgttccgtaatttgaacatatctcctttagagtaaaattttaaaaa 15084343  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29693324 - 29693400
Alignment:
Q  1 tttatgaaaaatggcaatgttctgtaatttgaacatctctccattagagcaaa-tttttaaaaagtacgtaattcaa 76  Q
    |||| ||| |||||||||||   ||||||||||||||||| | ||||| |||| |||||||||| ||||||||||||    
T  29693324 tttacgaagaatggcaatgtcgcgtaatttgaacatctcttctttagaacaaattttttaaaaaatacgtaattcaa 29693400  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 13624263 - 13624309
Alignment:
Q  16 aatgttctgtaatttgaacatctctccattagagcaaatttttaaaaa 63  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  13624263 aatgttccgtaatttgaacatctctcctttagag-aaatttttaaaaa 13624309  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 52037483 - 52037420
Alignment:
Q  14 gcaatgttctgtaatttgaacatctctccattagagcaa-atttttaaaaagtacgtaattcaa 76  Q
    ||||||||| ||||||||||||||||||| |||||| ||  |||||||||| ||| ||||||||    
T  52037483 gcaatgttccgtaatttgaacatctctcctttagaggaatttttttaaaaaatacataattcaa 52037420  T

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