View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_23 (Length: 294)
Name: NF14979_low_23
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 39952349 - 39952548
Alignment:
| Q |
85 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
184 |
Q |
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| T |
39952349 |
ccattgaaggatcaagatgtttcactataacgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
39952448 |
T |
|
| Q |
185 |
ttattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcat |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39952449 |
ttattgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcat |
39952548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 39952280 - 39952323
Alignment:
| Q |
16 |
aatattttgctgatggtcatacaatttcatccactaagaaagca |
59 |
Q |
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| T |
39952280 |
aatattttgctgatggtcatataatttcatccactaagaaagca |
39952323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 85 - 218
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
| Q |
85 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
184 |
Q |
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| T |
37221990 |
ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
37222089 |
T |
|
| Q |
185 |
ttattgtttttgtatatcctttccgcagatgtca |
218 |
Q |
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| T |
37222090 |
taattgtttttgtatatccttttcgcagatgtca |
37222123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
| Q |
85 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
184 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230240 |
ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
34230141 |
T |
|
| Q |
185 |
ttattgtttttgtatatccttt |
206 |
Q |
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|||||||||||||| ||||||| |
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| T |
34230140 |
ttattgtttttgtacatccttt |
34230119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 30339685 - 30339802
Alignment:
| Q |
85 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
184 |
Q |
| |
|
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
30339685 |
ccattgaaggatcaagttttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggtcagtagtatctcaaactcttgctga |
30339784 |
T |
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| Q |
185 |
ttattgtttttgtatatc |
202 |
Q |
| |
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|||||||||||||||||| |
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| T |
30339785 |
ttattgtttttgtatatc |
30339802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 30339616 - 30339659
Alignment:
| Q |
16 |
aatattttgctgatggtcatacaatttcatccactaagaaagca |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30339616 |
aatattttgctgatggtcatacaatttcatccactaagaaagca |
30339659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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