View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_24 (Length: 273)
Name: NF14979_low_24
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_24 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 28469550 - 28469285
Alignment:
| Q |
8 |
agaagcaaaggtccaatcacgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
107 |
Q |
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| T |
28469550 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttgtccctctaca |
28469451 |
T |
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| Q |
108 |
cactctaaccatggatttcttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccata |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28469450 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
28469351 |
T |
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| Q |
208 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgtcatagctttctaccataga |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28469350 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccataga |
28469285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 34734184 - 34734449
Alignment:
| Q |
8 |
agaagcaaaggtccaatcacgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
107 |
Q |
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| T |
34734184 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttgtccctctaca |
34734283 |
T |
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| Q |
108 |
cactctaaccatggatttcttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccata |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34734284 |
cactctaaccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
34734383 |
T |
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| Q |
208 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgtcatagctttctaccataga |
273 |
Q |
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| T |
34734384 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgccatagctttctaccataga |
34734449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 75490 - 75754
Alignment:
| Q |
8 |
agaagcaaaggtccaatcacgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
107 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
75490 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
75589 |
T |
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| Q |
108 |
cactctaaccatggatttcttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccata |
207 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
75590 |
cactcta-ccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
75688 |
T |
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| Q |
208 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgtcatagctttctaccataga |
273 |
Q |
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| T |
75689 |
aatctaacgtaaattgcaactaccctattaattcccaactaacatgccatagctttctaccataga |
75754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 24966169 - 24966433
Alignment:
| Q |
8 |
agaagcaaaggtccaatcacgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
107 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966169 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttgcataagctttctccctctaca |
24966268 |
T |
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| Q |
108 |
cactctaaccatggatttcttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaatctttcatctaaatatggaagaccata |
207 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24966269 |
cactcta-ccatggatttcttcaagaactcttgaaaattatcacaaaacaatgatgcacatgtgacagcaaaatctttcatctagatatggaagaccata |
24966367 |
T |
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| Q |
208 |
aatctgacgtaaattgcaactaccctattaattgccaattaacatgtcatagctttctaccataga |
273 |
Q |
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||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
24966368 |
aatctaacgtaaattgcaactaccctattaattcccaactaacatgccatagctttctaccataga |
24966433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 29317723 - 29317914
Alignment:
| Q |
82 |
gtttgcataagctttctccctctacacactctaaccatggatttcttcaggaactcttgaaaattatcacaaaacaatgatgcatatgtgacagcaaaat |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||| |
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| T |
29317723 |
gtttgcataagctttctccctctacacactctaaccatggatttctttaggaactcttgaaagttatcacaaaacaatgatgcacatgtgacatcaaaat |
29317822 |
T |
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| Q |
182 |
ctttcatctaaatatggaagaccataaatctgacgtaaattgcaactaccctattaattgccaattaacatgtcatagctttctaccataga |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29317823 |
ctttcatctaaatatggaagaccataaatctgacgtaaattgcaactaccatattaattgccaattaacatgccatagctttctaccataga |
29317914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 29315533 - 29315611
Alignment:
| Q |
8 |
agaagcaaaggtccaatcacgagagatgtctattgaaattggggtaatatgaccaaaatgttactttttggacggtttg |
86 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29315533 |
agaagaaaaggtccaatcacgagagatgtcttttgaaattggggtaatatgaccaaaatgttactttttggacggtttg |
29315611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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