View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_29 (Length: 235)
Name: NF14979_low_29
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_29 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 28468947 - 28468759
Alignment:
| Q |
1 |
atcataatagtatgcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28468947 |
atcataatagtaagcttttgtgtgcatcccaaacacaggtggaattcatgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
28468848 |
T |
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| Q |
101 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaactaaagaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28468847 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaaccaaagaa |
28468759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 34734787 - 34734975
Alignment:
| Q |
1 |
atcataatagtatgcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34734787 |
atcataatagtaagcttttgtgtgcatcccaaacacaggtggaattcatgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
34734886 |
T |
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| Q |
101 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaactaaagaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34734887 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaaccaaagaa |
34734975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 76092 - 76280
Alignment:
| Q |
1 |
atcataatagtatgcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
100 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76092 |
atcataatggtaagcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
76191 |
T |
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| Q |
101 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaactaaagaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
76192 |
atccacttcatacaatgaaagataaactgaatttcaaatggccgtacatttcaatgaatcatgctgcacaaagaattacaaccaaagaa |
76280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 29318676 - 29318864
Alignment:
| Q |
1 |
atcataatagtatgcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29318676 |
atcataatagtatgcttttgtttgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
29318775 |
T |
|
| Q |
101 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaactaaagaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
29318776 |
atccacttcatacaatgaaagataaactgaattttaaatggctgtacatttcaatgaatcatgttgcacaaagaattacaaccaaagaa |
29318864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 24966771 - 24966959
Alignment:
| Q |
1 |
atcataatagtatgcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
100 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24966771 |
atcataatggtaagcttttgtgtgcatcccaaacacaggtggaattcacgttatgtttctgatattaattcaggctatttataccgacaatattgcttga |
24966870 |
T |
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| Q |
101 |
atccacttcatacaatgaaagataaactgaatttcaaatggctgtacatttcaatgaatcatgctgcacaaagaattacaactaaagaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24966871 |
atccacttcatacaatgaaagataaactgaatttcaaatggccgtacatttcaatgaatcatgctgcacaaagaattacaaccaaagaa |
24966959 |
T |
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