View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_3 (Length: 624)
Name: NF14979_low_3
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 25 - 609
Target Start/End: Complemental strand, 31389607 - 31389025
Alignment:
| Q |
25 |
acacttgtccttaaaaaatgtatgatatttgtaattgatattgtatttttaaattctcttatatgtaagttgctgtccttcttgtaatccttttaagaat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || |
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| T |
31389607 |
acacttgtccttaaaaaatgtatgatatttgtaattgatattgtatttttaaattctcttttatgtaagttgctatccttcttgtaatccttttaagtat |
31389508 |
T |
|
| Q |
125 |
ttttgaattcagaattctgttcgtcctttctcttctctgcttttttatctatgcttgtgaaactattaagccgattgctaagtactgtgagaggcaaatg |
224 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
31389507 |
ttttgaattcagcattctgttcgacctttctcttctctgcttttttatctttgcttgtgaaacttttaagccgattgataagtactgtgagaggcaaatg |
31389408 |
T |
|
| Q |
225 |
attgatctggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattccttttgaaggctttggcttacaatggttatttg |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31389407 |
attgatctggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactaagataatgaattccttttgaaggctttggcttacaatggttatttg |
31389308 |
T |
|
| Q |
325 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttctctgattttc |
424 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
31389307 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattataccac--atatttataatagcttctctgattttc |
31389210 |
T |
|
| Q |
425 |
acttccttttactcttttctcttcgtannnnnnnccaattatacccatcatcatgattcacccttctcaaagaatgactttgttggctaacattcctatg |
524 |
Q |
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| T |
31389209 |
acttccttttactcttttctcttcgtatttttttccaattatacccatcatcatgattcacccttctcaaagaatgactttgttggctaacattcctatg |
31389110 |
T |
|
| Q |
525 |
atcagattgaaattcatttatattgttatctacaccttcaatttctatagctatatcatcaacttccattctcaaagttccaatt |
609 |
Q |
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| T |
31389109 |
atgagattgaaattcatttatattgttatctacaccatcaatttctatagctatatcatcaacttccattctcaaagttccaatt |
31389025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 203 - 609
Target Start/End: Complemental strand, 31462104 - 31461692
Alignment:
| Q |
203 |
taagtactgtgagaggcaaatgattgatctggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattcct----tttga |
298 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31462104 |
taagaactgtgagaggcaaatgattgatctggcatgtcatcagggacgtgatctgaaggtaaaagtaaagatactcagataatgaattccttttctttga |
31462005 |
T |
|
| Q |
299 |
aggctttggcttacaatggttatttgtgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacata |
398 |
Q |
| |
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| || ||||||||||| |||| ||||||||||||| ||||||| || |||| ||||||||||||||||||| |||||||||| ||||| || ||||| |
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| T |
31462004 |
atttttaggcttacaatgattatgtgtgtatattgtcacaataatctcttcatcaattgttctcacaactctttccttcacaacaaaattaggctacata |
31461905 |
T |
|
| Q |
399 |
tatttataatagcttctctgattttcacttccttttactcttttctcttcgtannnnnnnccaattatacccatcatcatgattcacc---cttctcaaa |
495 |
Q |
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|||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| ||||| ||| |
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| T |
31461904 |
catttattatagcttctctgattttcacttccttttact-attcctcttcgta-ttttttccaattatacctgtcatcatgattcacccttcttcttaaa |
31461807 |
T |
|
| Q |
496 |
gaatgactttgttggcta-acattcctatgatcagattgaaattcatttatattgttatctacaccttcaatttctatagctatatcatcaacttccatt |
594 |
Q |
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|| || |||||| ||| ||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31461806 |
gacagattttgtttcctattaattactataatcagattgaaattcatttatattattatctacaccatcaatttctatagctatatcatcaacttccatt |
31461707 |
T |
|
| Q |
595 |
ctcaaagttccaatt |
609 |
Q |
| |
|
||||||||||||||| |
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|
| T |
31461706 |
ctcaaagttccaatt |
31461692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 325 - 584
Target Start/End: Complemental strand, 31496588 - 31496327
Alignment:
| Q |
325 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttctctgattttc |
424 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||||| |||| |||||||||||| ||||||| |||| || |||||||||||||||| |||||||| |
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| T |
31496588 |
tgtatagtgtctcaataacttctccatctattgttctctcaacctttttcttcacaaaacaattaggccatgtacatttataatagcttctttgattttc |
31496489 |
T |
|
| Q |
425 |
acttccttttactcttttctcttcgtannnnnnnccaattatacccatcatcatgattcacccttctca---aagaatgactttgttggctaacattcct |
521 |
Q |
| |
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|||||||||| || ||||||||| || |||||||||||||||||||||||||| |||||| | | || | | ||||||||| | |||| || |
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| T |
31496488 |
acttccttttgctactttctcttcata-ctttttccaattatacccatcatcatgattcatccttcttactgacgacttattttgttggcgaccattact |
31496390 |
T |
|
| Q |
522 |
atgatcagattgaaattcatttatattgttatctacaccttcaatttctatagctatatcatc |
584 |
Q |
| |
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|| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |
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| T |
31496389 |
ataatcagattgaaattcatttctattgttatctacaccatcaatttctatagctacatcatc |
31496327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 479
Target Start/End: Complemental strand, 40845010 - 40844862
Alignment:
| Q |
325 |
tgtatattgtctcaataatttcgccatctattgttctcacaactcttttcttcacaacacaattatgccacatatatttataatagcttctctgattttc |
424 |
Q |
| |
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|||||| ||||||||||||||| |||||||| | |||| |||||||||||| ||||||| |||| || |||||||||||||||| |||||||| |
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| T |
40845010 |
tgtataatgtctcaataatttctccatctatact-----caacctttttcttcacaaaacaattaggccatgtacatttataatagcttctttgattttc |
40844916 |
T |
|
| Q |
425 |
acttccttttactcttttctcttcgtannnnnnnccaattatacccatcatcatg |
479 |
Q |
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| | ||||| || ||||||||| || ||||||||||||||||||||| |
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| T |
40844915 |
cccttcttttgctactttctcttcata-ctttttccaattatacccatcatcatg |
40844862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 609
Target Start/End: Complemental strand, 40844788 - 40844749
Alignment:
| Q |
570 |
tatagctatatcatcaacttccattctcaaagttccaatt |
609 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||| |
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| T |
40844788 |
tatagctatatcatcagcttccgttctcaaagttccaatt |
40844749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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