View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_33 (Length: 208)
Name: NF14979_low_33
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 21365204 - 21365380
Alignment:
| Q |
14 |
atgaagaacaacaattaagagaaactaaaaccaacttcaacctaattaatcaaatgattataactgaaaaaacaaggacaatacaataaatgaattatct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
21365204 |
atgaagaacaacaattaagagaaactaaaaccaacttcaacctaattaatcaaatgattataactgaaaaaacaaggacgatataataaatgaattatct |
21365303 |
T |
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| Q |
114 |
tattttgagtcgagaaaagtacaataaaatatgatgtgtgnnnnnnnataactaggtgggtcttgtgtgggacatag |
190 |
Q |
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| T |
21365304 |
tattttgagtcgagaaaagtacaatcaaatatgatgtgtgtttttttataactaggtgggtcttgtgtgggacatag |
21365380 |
T |
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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 2812483 - 2812550
Alignment:
| Q |
18 |
agaacaacaattaagagaaactaaaaccaacttcaacctaattaatcaaatgattataactgaaaaaa |
85 |
Q |
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| T |
2812483 |
agaacaacaattacgagaaactaaaactaacttcaacctaattaatcaaatgattataactgaaaaaa |
2812550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 47754331 - 47754269
Alignment:
| Q |
23 |
aacaattaagagaaactaaaaccaacttcaacctaattaatcaaatgattataactgaaaaaa |
85 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47754331 |
aacaattacgagaaactaaaaccaacttcaacctaattaatcaaatgattataactggaaaaa |
47754269 |
T |
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