View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14979_low_34 (Length: 207)
Name: NF14979_low_34
Description: NF14979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14979_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 45316589 - 45316410
Alignment:
| Q |
16 |
gtacatgttcgttttatggatcaaggttatgattagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaa |
115 |
Q |
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| T |
45316589 |
gtacatgttcgttttatggatcaaggttatgattagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaa |
45316490 |
T |
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| Q |
116 |
gtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggtacctatgct |
195 |
Q |
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| T |
45316489 |
gtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggtacctatgct |
45316410 |
T |
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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 94 - 187
Target Start/End: Complemental strand, 969051 - 968958
Alignment:
| Q |
94 |
ttgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggta |
187 |
Q |
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| T |
969051 |
ttgcagtgatactggcagaaaagtggaagatccagagttgttagaggcaattcgtttgacaattataaataatctgattcagtatcacccggta |
968958 |
T |
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