View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_high_16 (Length: 361)
Name: NF1497_high_16
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 9439501 - 9439149
Alignment:
| Q |
1 |
tatctggtctaaaattcttttcaggcgaaccttcatcaaattctcattgtatatatctcattcatggctctatcagcatgtcccaaacaagacttatttt |
100 |
Q |
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| T |
9439501 |
tatctggtctaaaattcttttcaggcgaaccttcatcaaattctcattgtatagatctcattcatggctctatcagcatgtcccaaacaagacttatttt |
9439402 |
T |
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| Q |
101 |
gtctgcaaggttgaaattggcaagatatagtgttcccatgattcttcttgttcggggagacattcctagtgaacctttcctggctgaactcactggagtc |
200 |
Q |
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| T |
9439401 |
gtctgcaaggttgaaattggcaagatatagtgttcccatgattcttcttgttcggggagacattcctagtgaacctttcctggctgaactcactggagtc |
9439302 |
T |
|
| Q |
201 |
attatgaatggattgaaggacgaggtgaaagttgaacgtaagtgctgggtcgatttccattcctatagagcccaaaaatgttatgttgtcaacctgattt |
300 |
Q |
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| T |
9439301 |
agtatgaatggattgaaggacgaggtgaaagttgaacgtaagtgctgggtcgatttccattcctatagagcccaaaaatgttatgttgtcaacctgattt |
9439202 |
T |
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| Q |
301 |
aggtttcagctgacagcctgacactgatactactactttttcaattgatgatg |
353 |
Q |
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| T |
9439201 |
aggtttcagctgacagcctgacactgatactactactttttcaattgctgatg |
9439149 |
T |
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