View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_high_19 (Length: 324)
Name: NF1497_high_19
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 36704360 - 36704675
Alignment:
| Q |
1 |
tgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704360 |
tgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatc |
36704459 |
T |
|
| Q |
101 |
actgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704460 |
actgagatcattgagcaaaaccttcacatcttgtacatcagataaaaaa-tcattccctccatagccaagaaaaagtgggaattcacttgagatttttgt |
36704558 |
T |
|
| Q |
201 |
catgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36704559 |
catgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactact |
36704658 |
T |
|
| Q |
301 |
caaatttcatagtataa |
317 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
36704659 |
caaatttcatagtataa |
36704675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 36711507 - 36711819
Alignment:
| Q |
1 |
tgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||||||||||| || ||| ||||||| || || |
|
|
| T |
36711507 |
tgggatcataaacgacttgtttagcattatcacccaatataaaatcaagatgtgcataatcatccttaaacaataccacacggttgctagcatcatggtc |
36711606 |
T |
|
| Q |
101 |
act---gagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttt |
197 |
Q |
| |
|
| | ||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
36711607 |
attattgagttcattgaacaaaaccttcacatcttgtacatcagatagagta-tctttccctccatagctgagaaaaagggggaattcactagggatttt |
36711705 |
T |
|
| Q |
198 |
tgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcact |
297 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
36711706 |
ggtcacgtcataagttggaggaaccctttgtccatagtgttgtaaattttgtgcttcatcaacataatcatactttgatatttgtccttttctgatcact |
36711805 |
T |
|
| Q |
298 |
actcaaatttcata |
311 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36711806 |
actcaaatttcata |
36711819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 307
Target Start/End: Complemental strand, 36664928 - 36664625
Alignment:
| Q |
3 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcac |
102 |
Q |
| |
|
|||||||||| || ||||||||||||| | |||| || ||||| ||||||||||| ||| || ||| | ||||| ||||||||| ||| ||||| |
|
|
| T |
36664928 |
ggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcgttcaacgacaccactagcttgttagaatcatgatcct |
36664829 |
T |
|
| Q |
103 |
tgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtca |
202 |
Q |
| |
|
|||| ||||| ||||||| |||||||| ||||| |||||| || | ||||||| || |||||||| ||||| || | | |||||| |||| |
|
|
| T |
36664828 |
tgaggtcattaagcaaaagattcacatcctgtacgtcagataacata-tcttgccctccaacacctagaaaaagagggaactcggtagggattttggtca |
36664730 |
T |
|
| Q |
203 |
tgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactca |
302 |
Q |
| |
|
|||||| ||||||||| | |||||||||||| ||| |||||||||| || ||||||||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
36664729 |
agtcataagttggaggagttcgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgtgatttttcctgttctcgtcactattca |
36664630 |
T |
|
| Q |
303 |
aattt |
307 |
Q |
| |
|
||||| |
|
|
| T |
36664629 |
aattt |
36664625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 36677317 - 36677393
Alignment:
| Q |
3 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
79 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| || ||||| |||||||||||| |||||| ||||| ||||| |
|
|
| T |
36677317 |
ggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
36677393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 36687399 - 36687475
Alignment:
| Q |
3 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
79 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| || ||||| |||||||||||| |||||| ||||| ||||| |
|
|
| T |
36687399 |
ggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
36687475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 36677440 - 36677489
Alignment:
| Q |
226 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
275 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||||||||||||||| |
|
|
| T |
36677440 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36677489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 36687522 - 36687571
Alignment:
| Q |
226 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
275 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||||||||||||||| |
|
|
| T |
36687522 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36687571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 30905805 - 30905505
Alignment:
| Q |
1 |
tgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatc |
100 |
Q |
| |
|
||||||||||||| |||||||||||| || | || | ||||||||||||||||||||| | |||||| | ||||| ||||||||||||| ||||| |
|
|
| T |
30905805 |
tgggatcataaaccacttgtttagcactgacggccataacaaaatcagcatgtgcataatcttgattgaacgctgccacgagcttgttagcatcatgatc |
30905706 |
T |
|
| Q |
101 |
actgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| || | ||||||||| || |||||||||||||| ||| | | |||||| || |
|
|
| T |
30905705 |
ttggaggtcattgagcaaaaccttcacatcttgtacatcagatagcata-tcttgccctccatatccgagaaaaagtgggaaatcattcgggattttggt |
30905607 |
T |
|
| Q |
201 |
catgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactact |
300 |
Q |
| |
|
|| ||| || ||||||||||| | ||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30905606 |
caggtcgtaagttggaggaactcgttgaccatagtgttgtacattttgtgcttgatcaacataatcatactttgctatttttcctgttctgatcactact |
30905507 |
T |
|
| Q |
301 |
ca |
302 |
Q |
| |
|
|| |
|
|
| T |
30905506 |
ca |
30905505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 30912271 - 30912203
Alignment:
| Q |
1 |
tgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttga |
69 |
Q |
| |
|
|||||||||||||| |||||||||| || ||| | |||||||||||||||||||||| ||||||| |
|
|
| T |
30912271 |
tgggatcataaacgtcttgtttagcggtgacactcataataaaatcagcatgtgcataattttccttga |
30912203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 11300745 - 11300706
Alignment:
| Q |
260 |
cataatcatactttgctatttttcctgttctgatcactac |
299 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11300745 |
cataatcatactttgctattgttccttttctgatcactac |
11300706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University