View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_high_28 (Length: 258)
Name: NF1497_high_28
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 35354517 - 35354295
Alignment:
| Q |
18 |
atcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaagggnnnnnnnnnnnnnnn----ttgga |
113 |
Q |
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| T |
35354517 |
atcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaaaaaaaaattgga |
35354418 |
T |
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| Q |
114 |
actaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatcc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354417 |
actaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatcc |
35354318 |
T |
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| Q |
214 |
aaatctggttgtgtagcattctg |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
35354317 |
aaatctggttgtgtagcattctg |
35354295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 35369456 - 35369329
Alignment:
| Q |
109 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
208 |
Q |
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|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
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| Q |
209 |
aatccaaatctggttgtgtagcattctg |
236 |
Q |
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| T |
35369356 |
aatccaaatctgattgtgtagcattctg |
35369329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 35378323 - 35378213
Alignment:
| Q |
126 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
225 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
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| Q |
226 |
gtagcattctg |
236 |
Q |
| |
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||||||||||| |
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| T |
35378223 |
gtagcattctg |
35378213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 19683783 - 19683664
Alignment:
| Q |
117 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
216 |
Q |
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||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
217 |
tctggttgtgtagcattctg |
236 |
Q |
| |
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|||| || |||||||||||| |
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| T |
19683683 |
tctgattatgtagcattctg |
19683664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 19632560 - 19632678
Alignment:
| Q |
117 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
216 |
Q |
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||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
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| Q |
217 |
tctggttgtgtagcattct |
235 |
Q |
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||||| ||||||||||||| |
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| T |
19632660 |
tctggctgtgtagcattct |
19632678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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