View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_high_35 (Length: 230)
Name: NF1497_high_35
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 54919225 - 54919113
Alignment:
| Q |
38 |
cattaaagatcgaatgcacataaaagtggtttatggaggttttgtaatgtatgcatgcttacatagacatgtgtaattaatgaattaacattgaaaaatg |
137 |
Q |
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| T |
54919225 |
cattaaagatcgaatgcacataaaagtggtttatggaggttttgtaacgtatgcatgcttacatagacatgtgtaattaatgaattaacattgaaaaatg |
54919126 |
T |
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| Q |
138 |
gtagcagtctatt |
150 |
Q |
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| T |
54919125 |
gtagcagtctatt |
54919113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 54922147 - 54922025
Alignment:
| Q |
27 |
ttggaaaatggcattaaagatcgaatgcacataaaagtggttta-tggaggttttgtaatgtatgcatgcttacatagacatgtgtaattaatgaattaa |
125 |
Q |
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| T |
54922147 |
ttggaaaatgacattaaggattgaatgtgcagagaagtgattttgtggacgttttgtaatgtctgcatgcttagatagacatgtgtagttaatgaattag |
54922048 |
T |
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| Q |
126 |
cattgaaaaatggtagcagtcta |
148 |
Q |
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||| | |||||| ||| |||||| |
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| T |
54922047 |
catcggaaaatgatagtagtcta |
54922025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 54921488 - 54921451
Alignment:
| Q |
9 |
gagatgaaggattaagtcttggaaaatggcattaaaga |
46 |
Q |
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| T |
54921488 |
gagatgaaggattaagtcttggaaaatggcattaaaga |
54921451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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