View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_high_4 (Length: 555)
Name: NF1497_high_4
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Original strand, 11544409 - 11544940
Alignment:
| Q |
18 |
gaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttagctaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11544409 |
gaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttatctaaa |
11544508 |
T |
|
| Q |
118 |
ataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11544509 |
ataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttg |
11544608 |
T |
|
| Q |
218 |
tgaaagtttaacaatgcctggtcaattgaaattgaaccatttaactcttgctagcattggtggtgttagagtctcttttcgcagcaccatggacgatgat |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
11544609 |
tgaaagtttaacaatgcctggtcaattggaattgaaccatttaactcttgctagcattggtggtattagagtctcttttcgcagcaccacggacgatgat |
11544708 |
T |
|
| Q |
318 |
acaagccagccaaatggcactattgttactgctgctaccaccctttggctccctctgcctgctcaaaaagtttttgaattcctcaaagatcctacaaagc |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11544709 |
acaagccagccaaatggcactattgttactgcggctaccaccctttggctccctctgcctgctctgaaagtttttgaattcctcaaagatcctacaaagc |
11544808 |
T |
|
| Q |
418 |
gatcacaggtaacatcttatgctttataattgagagtatactgtagctttggtccttgaatatgtcaaacgttatc----tagtctctgaattaatcaag |
513 |
Q |
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| T |
11544809 |
gatcacaggtaacatcttttgctttataattgagagtaaactgtagctttggtccttgaatatgtcaaacgttatctatatagtctctgaattaatcaag |
11544908 |
T |
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| Q |
514 |
attacgaaaaaatatactcgaatgtgtctctg |
545 |
Q |
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| T |
11544909 |
attacgaaaaaatatactcgaatgtgtctctg |
11544940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 11557830 - 11558302
Alignment:
| Q |
18 |
gaagaaactataggaggttaatcacactttgttttctaaatttacccttccaaaaatctctattcatctattttccttgtaaattttatatttagctaaa |
117 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11557830 |
gaagaaactataggaggttaatc-----ttgtcttctaaatttacccttccaaatatctctattcatctattttccttgtaaattttatatttagcgaat |
11557924 |
T |
|
| Q |
118 |
ataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttg |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||| |
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| T |
11557925 |
ttaattaatattatattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtgaagatgttttg |
11558024 |
T |
|
| Q |
218 |
tgaaagtttaacaatgcctggtcaattgaaattgaaccatttaactcttgctagcattggtggtgttagagtctcttttcgcagcaccatggacgatgat |
317 |
Q |
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|||| | |||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||| ||||||||| |
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| T |
11558025 |
tgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactcttgatagcattggtggggttagagtctctattcgcgcaaccaccgacgatgat |
11558124 |
T |
|
| Q |
318 |
acaagccagccaaatggcactattgttactgctgctaccaccctttggctccctctgcctgctcaaaaagtttttgaattcctcaaagatcctacaaagc |
417 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
11558125 |
gcaagccagccaaatggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaac |
11558224 |
T |
|
| Q |
418 |
gatcacaggtaacatcttatgctttataattgagagtatactgtagctttggtccttgaatatgtcaaacgttatcta |
495 |
Q |
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| T |
11558225 |
gatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaacgttatcta |
11558302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 151 - 425
Target Start/End: Complemental strand, 12064468 - 12064193
Alignment:
| Q |
151 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattgaaatt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||| || |||| |
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| T |
12064468 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaatt |
12064369 |
T |
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| Q |
251 |
gaaccatttaactcttgctagcattggtggtg-ttagagtctcttttcgcagcaccatggacgatgatacaagccagccaaatggcactattgttactgc |
349 |
Q |
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||||||||||||||||| |||||||||||| | ||||||||||| ||||| |||| ||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
12064368 |
gaaccatttaactcttgatagcattggtggggtttagagtctctcttcgcgataccaccgacaatgatacaagccagccaaatggcactgttgtaactgc |
12064269 |
T |
|
| Q |
350 |
tgctaccaccctttggctccctctgcctgctcaaaaagtttttgaattcctcaaagatcctacaaagcgatcacag |
425 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
12064268 |
tgctaccactctttggctccctctgcctgctcagaaagtttttgaattgctcaaagatcctacaaaacgatcacag |
12064193 |
T |
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