View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_high_40 (Length: 208)
Name: NF1497_high_40
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 22325573 - 22325779
Alignment:
| Q |
1 |
gaaactgtgttcgacgggctaaccaaaactaactcaagcgaacatataaacccagattcaacaagatccagaattgattagagataaggtcctcaagaag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
22325573 |
gaaattgtgttcgacgggctaaccaaaactaactcaagcgaacatataaacccagattcatcaagatccagaattgatcagagataaggtcctcaagaag |
22325672 |
T |
|
| Q |
101 |
aacagattgatggtggcccacaaagtcttccgatgattgagaacagctcatatggggcttgcgaaccaaactaggtcaaggataagagatgaataaacaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||| |
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| T |
22325673 |
aacagattgatggtggctcacaaagtcttccgataattgagaacagctcatatggggcttgcgaaccaaactaggtcgaggatcagagataaataaacaa |
22325772 |
T |
|
| Q |
201 |
atgaaca |
207 |
Q |
| |
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||||||| |
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| T |
22325773 |
atgaaca |
22325779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 22727661 - 22727455
Alignment:
| Q |
1 |
gaaactgtgttcgacgggctaaccaaaactaactcaagcgaacatataaacccagattcaacaagatccagaattgattagagataaggtcctcaagaag |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||| |
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| T |
22727661 |
gaaactgtgttcgacgggctaacacaagctaacttaagcgaacatataaacccagattcaacaagatccataattgatcagagataaggtcttcaagaag |
22727562 |
T |
|
| Q |
101 |
aacagattgatggtggcccacaaagtcttccgatgattgagaacagctcatatggggcttgcgaaccaaactaggtcaaggataagagatgaataaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
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| T |
22727561 |
aacagattgatggtggcccacaaagtcttccaatgattgagaacaactcatatggggcttgcgaaccaaactaggtcgaggatcagatatgaataaacaa |
22727462 |
T |
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| Q |
201 |
atgaaca |
207 |
Q |
| |
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||||||| |
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|
| T |
22727461 |
atgaaca |
22727455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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