View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_low_10 (Length: 464)
Name: NF1497_low_10
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 39791826 - 39791536
Alignment:
| Q |
30 |
ttaattaactcacaactctcacttacatgcatacttttcaaactggaagtaaatttcgtttaaaattgtatgattggggaccaccaaataaacatgacag |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39791826 |
ttaattaactcacaactctcacttacatgcatacttttcaaactggaagtaaatttcatttaaaattgtatgattggggaccaccaaataaacatgacag |
39791727 |
T |
|
| Q |
130 |
aaagaagctccatgaataaactaaaaaagagtaacaatcctgttttggtccaaaaatgtgtgagaagacatagtttgatttatctttcacatcattggat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39791726 |
aaagaagctccatgaataaactaaaaaagagtaacaatcctgttttggtccaaaaatgtgtgagaagacatagtttgatttatctttcacatcattggat |
39791627 |
T |
|
| Q |
230 |
acaagtataattataattcatgaattaatcaaaactataaatacatctccaagtaactttttgtttatataaacatcaaattttgaagatc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39791626 |
acaagtataattataattcatgaattaatcaaaactataaatacatctccaagtaactttttgtttatataaacatcaaattttgaagatc |
39791536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 39780597 - 39780502
Alignment:
| Q |
107 |
ggaccaccaaataaacatgacagaaagaagctccatgaataaactaaaaaagagtaacaatcctgttttggtccaaaaatgtgtgagaagacatagtt |
204 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
39780597 |
ggaccaccaaataaacatgacaaaaggaagctccatgaataaacta-aaaagagtaa-aatcctattttggttcaaaaatgtgtgagaagacatagtt |
39780502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 39791472 - 39791405
Alignment:
| Q |
384 |
catttattcaaacgacttgatcatcttcaaacaatcattcatggatactgtcgtttttagggtactct |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39791472 |
catttattcaaacgacttgatcatcttcaaacaatcattcatggatactgtcgtttttagggcactct |
39791405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 39780667 - 39780615
Alignment:
| Q |
58 |
gcatacttttcaaactggaagtaaatttcgtttaaaattgtatgattggggac |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39780667 |
gcatactttacaaactggaagtaaatttcgtttaaaattgtatgattggggac |
39780615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 454
Target Start/End: Complemental strand, 39795152 - 39795092
Alignment:
| Q |
393 |
aaacgacttgatcatcttcaaacaatcattcatggatactgtcgtttttagggtactctctg |
454 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
39795152 |
aaacgacttgatcatcttcaaacga-cattcatggataccgttgtttttaggatactctctg |
39795092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University