View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_low_11 (Length: 454)
Name: NF1497_low_11
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 54918524 - 54918944
Alignment:
| Q |
18 |
aacagggatatcaaaattaaataaactaagaaaacaagataaaagatggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatgaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54918524 |
aacagggatatcaaaattaaataaactaagaaaacgagataaaagatggaagcaaacctggtgatatcaacacgatattgagctctaaactcgatgaaga |
54918623 |
T |
|
| Q |
118 |
gatcaagcatctgaaccaaatcatccgaaaccaaaaaataccaacactgtttatgtgagactgacagaggaagaaaaatgaaacgcgcttgaggaatgaa |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54918624 |
gataaagcatctgaaccaaatcatccgaaaccaaaaaataccaacactgtttatgtgacattgacagaggaagaaaaatgaaacgcgcttgagggatgaa |
54918723 |
T |
|
| Q |
218 |
acagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54918724 |
acagttttgtggtttattttgacatgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaa |
54918823 |
T |
|
| Q |
318 |
ggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgtactcattagactacttccattt |
417 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54918824 |
ggtatcatctttcaattctcattggaaatttgtactcattgaactactatcattttccaatgctaactcaataattgtactcattagactactttcattt |
54918923 |
T |
|
| Q |
418 |
ttcaagggttaatcgtttcata |
439 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
54918924 |
ttcaa-ggttaatcgtttcata |
54918944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 439
Target Start/End: Original strand, 54921930 - 54922001
Alignment:
| Q |
368 |
cattttccaatgttaactcaataattgtactcattagactacttccatttttcaagggttaatcgtttcata |
439 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| ||||| |
|
|
| T |
54921930 |
cattttccaatgctaactccataattgtagtcattagactactaccattttccaaggcttaatcgtctcata |
54922001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 397
Target Start/End: Original strand, 54922126 - 54922227
Alignment:
| Q |
296 |
aatccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgt |
395 |
Q |
| |
|
||||||||||| |||||||||| || | |||||||| ||| || ||||||| |||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
54922126 |
aatccttaatgtcattttccaaagtttaatcattcatcactcatttgaaatttactctcattatactactatcattttccaattctaactcacaaattgt |
54922225 |
T |
|
| Q |
396 |
ac |
397 |
Q |
| |
|
|| |
|
|
| T |
54922226 |
ac |
54922227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University