View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_14 (Length: 405)
Name: NF1497_low_14
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_14 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 4203068 - 4203378
Alignment:
| Q |
19 |
ttctaaacacacaatctttcttagccctattaccacaatcttgacaaactctatactcagaaccatacacaccattttcttcactctccatcatagcaat |
118 |
Q |
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| T |
4203068 |
ttctaaacacacaatctttcttagccctattaccacaatcttgacacactctatactcagaaccatacacaccattttcttcactctccatcatagcaat |
4203167 |
T |
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| Q |
119 |
ttttccatgattctcttcttcattgatcactccnnnnnnnggaagattcactacttcaggacacatcctaaggttccaaaaattgttattgttactagga |
218 |
Q |
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| T |
4203168 |
ttttccatgattctcttcttcagtgatcactcctttttttggaagattcactacttcaggacacatcctaagattccaaaaattgttattgttactagga |
4203267 |
T |
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| Q |
219 |
ttttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaaatgccaaaaccaacacttaaggaagctgatg |
318 |
Q |
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| T |
4203268 |
ttttcttgaacttcattgttttgagattgttgttgtggcatgcaaggtgtagcagtgagaagtggaaaaatgccaaaaccaacacttaatgaagctgatg |
4203367 |
T |
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| Q |
319 |
aaggtaaagag |
329 |
Q |
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| T |
4203368 |
aaggtaaagag |
4203378 |
T |
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Target: scaffold0363 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 17034 - 17082
Alignment:
| Q |
29 |
acaatctttcttagccctattaccacaatcttgacaaactctatactca |
77 |
Q |
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| T |
17034 |
acaatctttcttagctctatttccacaatcttgacaaaccctaaactca |
17082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 14512779 - 14512731
Alignment:
| Q |
29 |
acaatctttcttagccctattaccacaatcttgacaaactctatactca |
77 |
Q |
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| T |
14512779 |
acaatctttcttagctctatttccacaatcttgacaaaccctaaactca |
14512731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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