View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_low_15 (Length: 393)
Name: NF1497_low_15
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 7801895 - 7802256
Alignment:
| Q |
1 |
gaagatatggatttgcaagaattgtgtacctgcctggcctttatgtctacttcgatctaggacaggagtaatttctctaataaccctctgagcatcaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7801895 |
gaagatatggatttgcaagaattgtgtacctgcctgtcctttatgtctgcttcgatctaggacaggagtaatttctctaataaccctctcagcatcaacc |
7801994 |
T |
|
| Q |
101 |
tcaacagactgcatttttccagaactacaattggtatgataatcaatgctacctccaagagatcttataaaaaaccgctgtcttctgaaaacaggcaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
7801995 |
tcaacagactgcatttttccagaactacaattggtatgataatcaatgctacctccaagagatcttatcaaaaaccgctgtcttctgaaaacaggcgaag |
7802094 |
T |
|
| Q |
201 |
aagccagtcgcatacaattctttgcacaatacaacaagggtaactgagaattcatgaccacatgtttcattaacatgaccaaacagcaa-cccctattca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7802095 |
aagccagtcgcatacaattctttgcacaatacaacaagggtaactgagaattcatgaccacatgtttcattaacatgaccaaacagcaaccccctattca |
7802194 |
T |
|
| Q |
300 |
caaacccaaacatgaataccttaaaaacaaaaacccccgattctaatatcaattattttttt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7802195 |
caaacccaaacatgaataccttaaaaacaaaaacccccgattctaatgtcaattattttttt |
7802256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University